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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / analysis / Dna.java
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables commit | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... commit | commitdiff
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences commit | commitdiff
2017-10-04 gmungocJAL-2738 match consequence "Allele" to VCF allele;... commit | commitdiff
2017-10-03 kiramtJAL-2674 testing commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-29 kiramtJAL-2674 finish with iterators for now commit | commitdiff
2017-09-28 kiramtJAL-2647 more iterators commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences commit | commitdiff
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... commit | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge commit | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... commit | commitdiff
2015-03-30 gmungocJAL-1264 remove broken applet build dependencies commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-06-17 Jim ProcterJAL-1035 option to allow 'STOP' codon to translate... commit | commitdiff
2013-06-17 Jim ProcterJAL-1312 rewrite of code for first reported exception... commit | commitdiff
2013-06-17 Jim ProcterJAL-1318 - route warnings to stderr (need to find a... commit | commitdiff
2013-06-17 Jim ProcterJAL-1318 avoid failure if SequenceI objects don't have... commit | commitdiff
2013-06-17 Jim ProcterJAL-966 avoid using java.util.Vector commit | commitdiff
2012-11-08 jproctertidy imports commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2009-06-24 jproctertake the average of the three consecutive codon sites... commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-11-12 jprocterminor translation bug commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2007-12-21 jprocterfurther bugfix and annotation transfer for dna/protein... commit | commitdiff
2007-07-13 jprocterbugfixes, partially working code for translation using... commit | commitdiff
2007-06-17 jprocterfix aligned DNA codon translation bug(s) and generate... commit | commitdiff
2007-05-22 jprocterfixed jalview 2.3 bug where gapped aligned codons were... commit | commitdiff
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute... commit | commitdiff
2007-03-19 jproctertranslate aligned cDNA to aligned peptide commit | commitdiff