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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / appletgui / AlignFrame.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args. commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2020-07-07 gmungocJAL-1424 streamlined message checker, corrected applet... commit | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX commit | commitdiff
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... commit | commitdiff
2020-02-12 Jim ProcterJAL-3187 applet alignFrame needs new api method commit | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-06-18 gmungocJAL-3304 option to export linked features in Jalview... commit | commitdiff
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() commit | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... commit | commitdiff
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus commit | commitdiff
2018-08-21 hansonrmc_view references were MCview commit | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff
2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence... commit | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff
2017-12-08 gmungocJAL-2843 refactor / tidy for feature filter input/output commit | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest commit | commitdiff
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... commit | commitdiff
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into... commit | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest commit | commitdiff
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-26 kiramtJAL-2674 Changes to pasting commit | commitdiff
2017-08-28 gmungocMerge branch 'bug/JAL-2687concurrentModification' into... commit | commitdiff
2017-08-28 gmungocJAL-2608 close any Overview when alignment view is... commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 commit | commitdiff
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed commit | commitdiff
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview... commit | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea... commit | commitdiff
2017-06-07 kiramtJAL-2591 Further refactoring (still incomplete) commit | commitdiff
2017-06-07 kiramtJAL-2591 More rationalising of hiddencols commit | commitdiff
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage commit | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... commit | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... commit | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff
2017-05-11 kiramtJAL-2491 First port to applet commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop commit | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... commit | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of... commit | commitdiff
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups commit | commitdiff
2017-03-24 gmungocJAL-2428 use 'correct' name for selected score model commit | commitdiff
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text... commit | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... commit | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV" commit | commitdiff
2017-02-09 gmungocJAL-1608 menu entry text; enable/disable Create/Remove... commit | commitdiff
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in... commit | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... commit | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... commit | commitdiff
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... commit | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... commit | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... commit | commitdiff
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... commit | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI commit | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... commit | commitdiff
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop commit | commitdiff
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee... commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... commit | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile... commit | commitdiff
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... commit | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message... commit | commitdiff
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... commit | commitdiff
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches... commit | commitdiff
2016-07-12 gmungocFileFormat enum wip changes commit | commitdiff
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