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JAL-3116 parse EMBL XML with JAXB (todo: update unit tests)
[jalview.git] / src / jalview / gui / AlignViewport.java
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... blob | commitdiff
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call blob | commitdiff | diff to current
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 blob | commitdiff | diff to current
2017-11-15 gmungocJAL-2835 spike updated with latest blob | commitdiff | diff to current
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 blob | commitdiff | diff to current
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains blob | commitdiff | diff to current
2017-10-27 gmungocJAL-1793 spike branch updated to latest blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-09-29 kiramtJAL-2674 finish with iterators for now blob | commitdiff | diff to current
2017-09-28 kiramtJAL-2647 more iterators blob | commitdiff | diff to current
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose... blob | commitdiff | diff to current
2017-09-05 gmungocJAL-2225 unused collateForPdb removed blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 blob | commitdiff | diff to current
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class blob | commitdiff | diff to current
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... blob | commitdiff | diff to current
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... blob | commitdiff | diff to current
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... blob | commitdiff | diff to current
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling blob | commitdiff | diff to current
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 use constant for preference token blob | commitdiff | diff to current
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... blob | commitdiff | diff to current
2017-04-24 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree... blob | commitdiff | diff to current
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices blob | commitdiff | diff to current
2017-03-21 kiramtJAL-2388 Made ViewportRanges final blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code blob | commitdiff | diff to current
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... blob | commitdiff | diff to current
2017-03-08 gmungocJAL-2435 copy font changes across split screen blob | commitdiff | diff to current
2017-03-07 kiramtJAL-2388 Missed commit blob | commitdiff | diff to current
2017-03-06 kiramtJAL-2388 Dependency tidy blob | commitdiff | diff to current
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... blob | commitdiff | diff to current
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... blob | commitdiff | diff to current
2017-03-01 kiramtJAL-2388 Reverted to previous blob | commitdiff | diff to current
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile blob | commitdiff | diff to current
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... blob | commitdiff | diff to current
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... blob | commitdiff | diff to current
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow blob | commitdiff | diff to current
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface... blob | commitdiff | diff to current
2017-02-10 gmungocJAL-2371 small move of code, typo correction blob | commitdiff | diff to current
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is... blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... blob | commitdiff | diff to current
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... blob | commitdiff | diff to current
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... blob | commitdiff | diff to current
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI blob | commitdiff | diff to current
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... blob | commitdiff | diff to current
2016-11-28 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-25 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane blob | commitdiff | diff to current
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 license header blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 source formatting blob | commitdiff | diff to current
2016-09-22 gmungocJAL-2216 new dispose() method to null references blob | commitdiff | diff to current
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum blob | commitdiff | diff to current
2016-08-24 gmungocJAL-1854 removed pointless method override blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... blob | commitdiff | diff to current
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... blob | commitdiff | diff to current
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI blob | commitdiff | diff to current
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... blob | commitdiff | diff to current
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... blob | commitdiff | diff to current
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' blob | commitdiff | diff to current
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch blob | commitdiff | diff to current
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... blob | commitdiff | diff to current
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch blob | commitdiff | diff to current
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from... blob | commitdiff | diff to current
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... blob | commitdiff | diff to current
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ... blob | commitdiff | diff to current
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... blob | commitdiff | diff to current
2015-08-05 Jim ProcterJAL-1822 create dataset sequences if they aren’t alread... blob | commitdiff | diff to current
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject blob | commitdiff | diff to current
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate blob | commitdiff | diff to current
2015-07-01 gmungocJAL-1619 align the added sequences to match what they... blob | commitdiff | diff to current
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even... blob | commitdiff | diff to current
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject blob | commitdiff | diff to current
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate blob | commitdiff | diff to current
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... blob | commitdiff | diff to current
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop blob | commitdiff | diff to current
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile blob | commitdiff | diff to current
2015-06-10 tcofoegbuJAL-1641 updated applet version blob | commitdiff | diff to current
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() blob | commitdiff | diff to current
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... blob | commitdiff | diff to current
2015-05-11 James ProcterJAL-1690 make splitframe enabled by default blob | commitdiff | diff to current
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... blob | commitdiff | diff to current
2015-04-23 gmungocJAL-1681 create mappings before AlignFrame to ensure... blob | commitdiff | diff to current
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