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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / gui / Desktop.java
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console... commit | commitdiff
2023-11-02 James ProcterJAL-4169 fix up urls to faq and documentation commit | commitdiff
2023-10-23 James ProcterJAL-4310 let the user know when model pages are not... commit | commitdiff
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup commit | commitdiff
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri... commit | commitdiff
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... commit | commitdiff
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser... commit | commitdiff
2023-10-11 Ben SoaresJAL-629 correct a timeout. Correct passing html flag. commit | commitdiff
2023-10-11 Ben SoaresJAL-629 Add a timeout to modal dialogs for command... commit | commitdiff
2023-10-11 Ben SoaresJAL-4298 Added diagnostics and minor dimension changes... commit | commitdiff
2023-10-05 Ben SoaresJAL-4298 Fixed initial log level to see .jalview_proper... commit | commitdiff
2023-09-12 Ben SoaresJAL-4262 Allow HTML in the dialog box for link to CLI... commit | commitdiff
2023-09-12 Ben SoaresJAL-4285 Better checkFiles processing. Better dialog. commit | commitdiff
2023-09-12 Ben SoaresJAL-4285 JAL-4262 Added a scrollable dialog to display... commit | commitdiff
2023-09-08 Ben SoaresJAL-4262 Dialog for GUI and WARN for CLI of old style... commit | commitdiff
2023-08-24 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f... commit | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn... commit | commitdiff
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of... commit | commitdiff
2023-06-29 Ben SoaresJAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux commit | commitdiff
2023-06-26 Ben SoaresMerge branch 'develop' into improvement/JAL-4206_improv... improvement/JAL-4206_improve_JalviewFileChooser_for_flatlaf commit | commitdiff
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising commit | commitdiff
2023-06-15 Ben SoaresJAL-4206 Use All Known Alignment Files as default until... commit | commitdiff
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest... commit | commitdiff
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails commit | commitdiff
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... commit | commitdiff
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie... commit | commitdiff
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... commit | commitdiff
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin... commit | commitdiff
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them commit | commitdiff
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added... commit | commitdiff
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries commit | commitdiff
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... commit | commitdiff
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... commit | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply commit | commitdiff
2023-05-05 Ben SoaresJAL-629 test fixes commit | commitdiff
2023-03-28 Ben SoaresJAL-629 Opening files in new windows. not working yet commit | commitdiff
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff
2023-03-24 Ben SoaresJAL-629 Test tidyup commit | commitdiff
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to... commit | commitdiff
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr... commit | commitdiff
2023-03-17 Ben SoaresJAL-629 All applications System.exits going through... commit | commitdiff
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader... commit | commitdiff
2023-02-13 Ben SoaresMerge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL... commit | commitdiff
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer... commit | commitdiff
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler... commit | commitdiff
2023-01-17 Ben SoaresJAL-3416 No longer needed commit | commitdiff
2023-01-16 Ben SoaresJAL-3416 More tweaking of FlatLaf. Problem with macOS... commit | commitdiff
2022-12-08 Ben SoaresJAL-629 fix opening files commit | commitdiff
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments commit | commitdiff
2022-11-16 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG... commit | commitdiff
2022-11-16 Ben SoaresJAL-3416 make flatlaf default for linux improvement/JAL-3416_default_to_LIVE_DRAG_MODE_for_flatlaf commit | commitdiff
2022-11-09 Ben SoaresMerge branch 'bug/JAL-1988_JAL-3772_improved_quit_handl... commit | commitdiff
2022-11-09 Ben SoaresJAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving... bug/JAL-1988_JAL-3772_improved_quit_handling commit | commitdiff
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution... commit | commitdiff
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Tidying of unspecified Callable decla... commit | commitdiff
2022-11-02 Ben SoaresJAL-1988 JAL-3772 Moving packages to somewhere more... commit | commitdiff
2022-11-01 Ben SoaresJAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE commit | commitdiff
2022-10-28 Ben SoaresJAL-1988 JAL-3772 Removed 'Wait' button from waitDialog... commit | commitdiff
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave... commit | commitdiff
2022-09-23 Ben SoaresJAL-1988 JAL-3772 Quit confirmation dialog boxes with... commit | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... commit | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... commit | commitdiff
2022-04-06 Ben SoaresJAL-3991 Made info displayed only when needed (Java... commit | commitdiff
2022-04-06 Ben SoaresJAL-3991 Added information output about the slightly... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user... commit | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab... commit | commitdiff
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still... commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick commit | commitdiff
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... commit | commitdiff
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba... commit | commitdiff
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... commit | commitdiff
2021-02-10 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba... commit | commitdiff
2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi... commit | commitdiff
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference... commit | commitdiff
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... commit | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen commit | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... commit | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title commit | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting commit | commitdiff
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit commit | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... commit | commitdiff
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... commit | commitdiff
2020-05-29 gmungocJAL-2422 test updated commit | commitdiff
2020-04-16 BobHansonJAL-3587 Load Project bug commit | commitdiff
2020-04-07 soaresmerge from develop: Most of the changes commit | commitdiff
2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference commit | commitdiff
2020-03-30 gmungocJAL-3210 debug logging commented out commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent... commit | commitdiff
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings... commit | commitdiff
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