Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / io / MSFfile.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
2016-07-18 gmungocfileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com...
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep...
2012-11-15 jprocterMerge branch 'develop' into menard
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-06-24 jprocterfix to preserve sequence numbering in MSF (JAL-847)
2011-01-05 jprocterJAL-727
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-01-29 jprocterFileParse object can be re-used to read different files...
2007-02-07 amwaterhouseFormatting
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space
2006-12-05 amwaterhouseSequence is char []
2006-08-21 amwaterhouseheader updated
2006-07-27 amwaterhouseremove unnecessary constructor
2006-02-08 amwaterhouseReport invalid chars
2005-12-06 amwaterhouseafter merge
2005-10-05 amwaterhouseSequence start end added for the time being
2005-09-30 amwaterhouseRemove redundancy in Eclipse
2005-08-23 amwaterhouseRegex should not be static in file loader
2005-07-29 amwaterhouseuse 1 & -1 if start/end not specified
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-27 jprocterAdded nicer header formatting for MSFfile output.
2005-05-27 jprocterResponse to bug mantis?id=8187 - some quick hacks to...
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2004-11-02 amwaterhouseJalview Imported Sources start