Merge branch 'feature/JAL-3127_seqidChainshading' into merge/JAL-3127
[jalview.git] / src / jalview / schemes / AnnotationColourGradient.java
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu...
2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMi...
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour...
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-02-14 gmungocJAL-2346 remove refactored fields, fix test for above...
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-02 gmungocJAL-2346 Javadoc correction
2016-12-02 gmungocJAL-2346 fixed bug (in code not reached by Jalview)
2016-12-01 gmungocJAL-2346 restore choice of annotation for colouring...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati...
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit...
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-01 Jim ProcterJAL-795 hack to ignore black colour in annotation element.
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton...
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (store...
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation...
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour...
2014-07-18 j.procter@dundee... JAL-795 take colour from annotation if colour is present
2014-06-13 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-01 Jim Procterremove todo
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow...
2014-04-21 Jim Procteravoid potential NPE
2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-17 Jim ProcterJAL-1397 propagate any consensus/conservation coloursch...
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag
2013-06-21 Jim ProcterJAL-1241 - generate colour for all annotation values...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associa...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2010-04-02 jproctermade threshold type enumaration into set of constants
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-04-27 amwaterhouseAnnotation gradient will use direct colours if no graph...
2007-04-27 amwaterhouseAllow threshold to be min/max
2007-02-07 amwaterhouseFormatting
2006-12-05 amwaterhouseSequence is char []
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-08-21 amwaterhouseheader updated
2006-04-05 amwaterhousepublic get methods
2006-02-16 amwaterhouseDont colour gaps
2006-02-16 amwaterhouseUse original colour scheme as base for annotation colouring
2006-02-15 amwaterhouseThreshold is a single element
2006-02-08 amwaterhouseColour above or below threshold
2006-02-03 amwaterhouseMake java 1.1 compatible
2006-01-30 amwaterhouseGet min and max colour added
2006-01-30 amwaterhouseNew files