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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / util / DBRefUtils.java
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-01-25 James ProcterJAL-4116 relegate the failed to promote warning to... commit | commitdiff
2023-01-25 James ProcterJAL-4116 relegate the failed to promote warning to... commit | commitdiff
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop commit | commitdiff
2020-02-14 Jim Procterfix for JAL-3529 commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-02-04 hansonrrefactoring for DBMODList commit | commitdiff
2019-01-26 hansonrremoving cyclic call commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties commit | commitdiff
2016-10-03 gmungocJAL-2110 javadoc formatting only commit | commitdiff
2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence commit | commitdiff
2016-09-27 Jim ProcterJAL-2210 formatting commit | commitdiff
2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources... commit | commitdiff
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty... commit | commitdiff
2016-08-30 Jim ProcterJAL-2154 always compare canonicalised DBRefEntry source... commit | commitdiff
2016-08-30 Jim ProcterJAL-2154 simplify expression commit | commitdiff
2016-08-29 Jim ProcterJAL-2154 canonical dbsources are lowercased before... commit | commitdiff
2016-08-29 Jim ProcterJAL-2154 ENA specific Ensembl canonical db prefixes commit | commitdiff
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs commit | commitdiff
2016-06-03 gmungocJAL-2110 random stuff commit | commitdiff
2016-05-20 gmungocJAL-2110 unit tests for and minor refactoring of CrossRef commit | commitdiff
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id... commit | commitdiff
2016-01-29 gmungocJAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei... commit | commitdiff
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy commit | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-06-28 Jim ProcterJAL-1705 refactored code for dbsource reggae validator... commit | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... commit | commitdiff
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... commit | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs... commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2012-11-17 jprocterstore chaincode on pdbentry commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2009-06-19 jprocterdebug comments commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2008-08-01 jproctertodo commit | commitdiff
2007-10-24 jprocteradd parsed PDB reference to sequences commit | commitdiff
2007-09-29 jprocterjavadoc commit | commitdiff
2007-09-07 jprocteradded a more general DBRef search interface commit | commitdiff
2007-07-25 jprocteruniprot synonym commit | commitdiff
2007-07-13 jprocternew search method for finding references like other... commit | commitdiff
2007-06-18 jprocter1.1 methods commit | commitdiff
2007-04-30 jprocterjavadoc commit | commitdiff
2007-03-19 jprocterNew method for mapping from common database sources... commit | commitdiff
2007-02-07 amwaterhouseFormatting commit | commitdiff
2006-08-21 amwaterhouseheader updated commit | commitdiff
2006-07-21 amwaterhouseDBRefs now array commit | commitdiff
2006-06-08 jprocterIntroduced DbRefEntry to DasSourceCoordinateSystem... commit | commitdiff
2006-03-14 jproctermethods for searching DBRef lists commit | commitdiff