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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / ws / DBRefFetcher.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2021-09-29 Jim ProcterJAL-3881 split on any nonalphanumeric symbol (plus... commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-06-24 Jim ProcterJAL-3330 dbreffetcher: record any feature display model... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff
2019-03-06 gmungocJAL-3035 more das bits removed commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-17 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... commit | commitdiff
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures commit | commitdiff
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree commit | commitdiff
2018-06-27 hansonrJAL-3032 just the changes pulled already commit | commitdiff
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! commit | commitdiff
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-14 gmungocJAL-2541 revised cut with features (work in progress) commit | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... commit | commitdiff
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages commit | commitdiff
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code... commit | commitdiff
2016-08-26 Jim ProcterJAL-2154 patch regression on DbRefFetcher due to PDB... commit | commitdiff
2016-08-24 Jim ProcterJAL-2106 tidy up and comments for DBRefFetcher commit | commitdiff
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... commit | commitdiff
2016-03-28 gmungocJAL-2036 update AlignFrame menus when dbreffetcher... commit | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge commit | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... commit | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... commit | commitdiff
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting commit | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDat... commit | commitdiff
2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequenc... commit | commitdiff
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control... commit | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-12-25 darolmarJAL-1355 (basic i18n support) commit | commitdiff
2013-06-19 Jim ProcterJAL-1240 avoid NPE when source has no proxy available commit | commitdiff
2012-11-08 jproctertidy imports commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2012-10-03 jprocterformatting commit | commitdiff
2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names... commit | commitdiff
2012-04-24 jprocterJAL-1064 sequence database sources are stored and retri... commit | commitdiff
2012-04-20 jprocterJAL-1064 - refactor to iterate over many sources associ... commit | commitdiff
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972... commit | commitdiff
2012-02-29 jprocterrefactoring dassequencesource code fallout commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2010-03-11 jprocterwarning for unresolvable database source strings (or... commit | commitdiff
2009-06-24 jprocterall alignment sequences associated with a dataset seque... commit | commitdiff
2009-06-19 jprocterbugfix mapped reference transfer and made picr ID retri... commit | commitdiff
2009-06-12 jprocterreinstated blind querying of datasources. Transfer... commit | commitdiff
2009-06-08 jprocter*experimental use of picr* apply gpl development license commit | commitdiff
2008-12-19 jproctertodo commit | commitdiff
2008-12-04 jprocterfetch database references for all EBI db + selected... commit | commitdiff
2008-11-04 jprocterbugfix db ref retrieve routine so it removes dead query... commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2008-08-26 jprocteruses shared singleton from jalview.gui.SequenceFetcher... commit | commitdiff
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and... commit | commitdiff
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property... commit | commitdiff
2008-01-22 jprocterensured that seqeunce feature shift takes into account... commit | commitdiff
2007-12-21 jproctersequence db fetcher and db reference validation/annotat... commit | commitdiff
2007-11-16 jprocterrefactored ebi soap client and AbstractSequenceFetcher... commit | commitdiff
2007-07-13 jprocternew DBRef management and generalised source and entry... commit | commitdiff