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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git] / src / jalview / ws / dbsources / EmblXmlSource.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2022-01-26 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping commit | commitdiff
2021-10-01 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping commit | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... commit | commitdiff
2020-10-28 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping commit | commitdiff
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test... commit | commitdiff
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... commit | commitdiff
2020-07-27 gmungocJAL-3692 refactor/complete parsing, more unit test... commit | commitdiff
2020-07-21 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS... commit | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... commit | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... commit | commitdiff
2018-11-08 gmungocJAL-3116 better unmarshalling of EMBL/Uniprot XML commit | commitdiff
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB commit | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-22 Jim ProcterJAL-1551 formatting commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' commit | commitdiff
2016-10-06 gmungocJAL-2254 map error text in root node of EMBL XML response commit | commitdiff
2016-10-06 gmungocJAL-2245 checks for null added (in case EMBL fetch... commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for... commit | commitdiff
2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange commit | commitdiff
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... commit | commitdiff
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... commit | commitdiff
2016-03-22 tcofoegburesolve conflict with Mungo's merge commit | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... commit | commitdiff
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings commit | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank... commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2012-11-08 jproctertidy imports commit | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff
2011-09-27 jprocterapply version 2.7 copyright commit | commitdiff
2010-09-23 jprocterapply jalview code style commit | commitdiff
2010-09-23 jprocterJalview 2.6 source licence commit | commitdiff
2010-04-30 jprocterjalview 2.5 release banner commit | commitdiff
2009-06-08 jprocterapply gpl development license commit | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch commit | commitdiff
2007-12-21 jproctersequence db fetcher and db reference validation/annotat... commit | commitdiff
2007-11-16 jprocterrefactored ebi soap client and AbstractSequenceFetcher... commit | commitdiff
2007-08-24 jprocterremove null pointer exception when embl file is not... commit | commitdiff
2007-07-13 jprocternew DBRef management and generalised source and entry... commit | commitdiff