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2020-10-15	gmungoc	JAL-3763 unused method removed	commit \| commitdiff \| tree
2020-10-08	gmungoc	JAL-3700 JAL-3763 create datasets for test sequences	commit \| commitdiff \| tree
2020-10-08	gmungoc	JAL-3763 failsafe check for null	commit \| commitdiff \| tree
2020-10-08	gmungoc	JAL-3763 refactored getCoveringMapping for virtual...	commit \| commitdiff \| tree
2020-10-08	gmungoc	JAL-3763 always make a new dataset sequence for CDS...	commit \| commitdiff \| tree
2020-09-17	gmungoc	JAL-3700 additions and corrections to unit tests	commit \| commitdiff \| tree
2020-08-05	gmungoc	JAL-3700 fix for propagation of sort commands	commit \| commitdiff \| tree
2020-08-03	gmungoc	JAL-3700 check for 'covering' mapping when matching...	commit \| commitdiff \| tree
2020-07-07	gmungoc	JAL-1424 streamlined message checker, corrected applet...	commit \| commitdiff \| tree
2020-07-06	gmungoc	JAL-1424 slight tidying of reporting	commit \| commitdiff \| tree
2020-07-06	gmungoc	JAL-3311 JAL-3141 JAL-3144 tidying obsolete message...	commit \| commitdiff \| tree
2020-07-06	gmungoc	JAL-3518 Spanish text for 'write features'	commit \| commitdiff \| tree
2020-07-06	gmungoc	JAL-3570 JAL-3187 spanish translations for tabbed feature...	commit \| commitdiff \| tree
2020-07-06	gmungoc	JAL-3570 updated external help links	commit \| commitdiff \| tree
2020-07-02	gmungoc	JAL-2656 JAL-3615 check response headers to test for...	commit \| commitdiff \| tree
2020-07-02	gmungoc	JAL-3615 used gzip endpoints for Pfam and Rfam	commit \| commitdiff \| tree
2020-06-29	gmungoc	JAL-3674 more finessed asynchronous structure commands	commit \| commitdiff \| tree
2020-06-29	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-06-29	gmungoc	JAL-3518 corrected pulled up focusView() command	commit \| commitdiff \| tree
2020-06-29	gmungoc	JAL-3518 corrected action on pulled up closeViewer()	commit \| commitdiff \| tree
2020-06-28	gmungoc	JAL-3551 PyMOL command constants tidied	commit \| commitdiff \| tree
2020-06-28	gmungoc	JAL-3551 fit to window (zoom) command for PyMOL	commit \| commitdiff \| tree
2020-06-26	gmungoc	JAL-3518 tidy up asynchronous structure command execution	commit \| commitdiff \| tree
2020-06-25	gmungoc	JAL-2010 unused prototype method removed	commit \| commitdiff \| tree
2020-06-25	gmungoc	JAL-3518 pull up [get\|list]ResidueAttributes to StructureCom...	commit \| commitdiff \| tree
2020-06-23	gmungoc	JAL-3518 separation of ChimeraXManager, pull up of...	commit \| commitdiff \| tree
2020-06-23	gmungoc	JAL-3518 pull up closeViewer() and external viewer...	commit \| commitdiff \| tree
2020-06-01	gmungoc	JAL-3518 test result corrected	commit \| commitdiff \| tree
2020-06-01	gmungoc	JAL-3518 add alwaysRun = true [sigh]	commit \| commitdiff \| tree
2020-06-01	gmungoc	JAL-3518 more test coverage for structure commands	commit \| commitdiff \| tree
2020-05-29	gmungoc	JAL-2422 test updated	commit \| commitdiff \| tree
2020-05-29	gmungoc	Merge branch 'feature/JAL-3551Pymol' into develop	commit \| commitdiff \| tree
2020-05-29	gmungoc	JAL-3551 null pointer defence while structure files...	commit \| commitdiff \| tree
2020-05-28	gmungoc	JAL-3551 corrected Pymol open session command	commit \| commitdiff \| tree
2020-05-28	gmungoc	JAL-2422 correct ChimeraX save/open session commands...	commit \| commitdiff \| tree
2020-05-26	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-05-26	gmungoc	JAL-1889 disable test failing on build server	commit \| commitdiff \| tree
2020-05-26	gmungoc	JAL-3624 log when SIFTS mapping fails	commit \| commitdiff \| tree
2020-05-26	gmungoc	Merge branch 'feature/JAL-3624siftsInJS' into develop	commit \| commitdiff \| tree
2020-05-26	gmungoc	JAL-1761 pattern for structure viewer construction...	commit \| commitdiff \| tree
2020-05-24	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	commit \| commitdiff \| tree
2020-05-21	gmungoc	JAL-3551 copy Jalview features to Pymol 'p' (with pull...	commit \| commitdiff \| tree
2020-05-21	gmungoc	JAL-2422 highlight ChimeraX selection (ChimeraX-1.0...	commit \| commitdiff \| tree
2020-05-20	gmungoc	JAL-3626 use Viewer.scriptWait() to send Jmol commands...	commit \| commitdiff \| tree
2020-05-19	gmungoc	JAL-3621 corrected sequence feature sort and test	commit \| commitdiff \| tree
2020-05-19	gmungoc	JAL-3621 corrected sequence feature sort and test	commit \| commitdiff \| tree
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	commit \| commitdiff \| tree
2020-05-19	gmungoc	JAL-3624 use temp file for SIFT download in JS, correct...	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3463 avoid Thread.sleep() as not supported in SwingJS	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3621 update to intervalstore v1.1	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3529 test updated for revised signature of getDBRefs()	commit \| commitdiff \| tree
2020-05-18	gmungoc	Merge branch 'Jalview-JS/develop' into develop	commit \| commitdiff \| tree
2020-05-18	gmungoc	JAL-3613 remove debug code committed in error	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-2422 JAL-3551 unit tests updated for code changes	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-3619 default silently to Jmol if viewerType absent...	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-3551 pull up Close Viewer dialog to base class	commit \| commitdiff \| tree
2020-05-15	gmungoc	Merge branch 'feature/JAL-3551Pymol' into feature/JAL...	commit \| commitdiff \| tree
2020-05-15	gmungoc	JAL-3551 raise label on ('highlight') structure residue...	commit \| commitdiff \| tree
2020-05-12	gmungoc	JAL-3518 tidy method, remove obsolete comment	commit \| commitdiff \| tree
2020-05-12	gmungoc	JAL-3518 failsafe check for null Jmol filename while...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-3551 concatenate colour by sequence commands for...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-2422 JAL-3551 viewer text/variables generalised...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-2422 ChimeraX paths (versions up to 1.0) added...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-1333 additional Chimera versions for Windows installatio...	commit \| commitdiff \| tree
2020-05-11	gmungoc	JAL-2422 restore saved ChimeraX session from project	commit \| commitdiff \| tree
2020-05-01	gmungoc	JAL-3613 check sequence overlap when matching search...	commit \| commitdiff \| tree
2020-04-30	gmungoc	JAL-3551 save structure viewer session refactorings...	commit \| commitdiff \| tree
2020-04-30	gmungoc	JAL-3551 tidied error handling for HTTP request	commit \| commitdiff \| tree
2020-04-25	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	commit \| commitdiff \| tree
2020-04-21	gmungoc	JAL-3210 try adding setup method to unit test failing...	commit \| commitdiff \| tree
2020-04-21	gmungoc	JAL-1889 corrected wait for consensus to be calculated	commit \| commitdiff \| tree
2020-04-21	gmungoc	JAL-3603 load annotation file from RELATIVE_URL in...	commit \| commitdiff \| tree
2020-04-17	gmungoc	JAL-3567 unit tests for linked feature tooltips	commit \| commitdiff \| tree
2020-04-16	gmungoc	JAL-3567 adjust layout of linked feature report, unit...	commit \| commitdiff \| tree
2020-04-16	gmungoc	JAL-3567 added 'imputed by Jalview' to protein consequence...	commit \| commitdiff \| tree
2020-04-16	gmungoc	JAL-3567 report mapped location for virtual features...	commit \| commitdiff \| tree
2020-04-14	gmungoc	JAL-3583 remove debug logging, Javadoc added	commit \| commitdiff \| tree
2020-04-13	gmungoc	JAL-3574 test coverage corners	commit \| commitdiff \| tree
2020-04-13	gmungoc	JAL-3574 Matcher with integer/long value pattern (e...	commit \| commitdiff \| tree
2020-04-12	gmungoc	JAL-3596 change redacted	commit \| commitdiff \| tree
2020-04-12	gmungoc	JAL-3596 don't draw text over features if Show Text...	commit \| commitdiff \| tree
2020-04-12	gmungoc	JAL-3583 consistent last[Formatted]Tooltip, show once...	commit \| commitdiff \| tree
2020-04-07	gmungoc	JAL-3210 fudge for JalviewJS to avoid IntervalStore...	commit \| commitdiff \| tree
2020-04-06	gmungoc	JAL-3581 no hidden sequence marker if hidden markers...	commit \| commitdiff \| tree
2020-04-06	gmungoc	JAL-3581 no hidden sequence marker if hidden markers...	commit \| commitdiff \| tree
2020-04-06	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-04-06	gmungoc	JAL-3579 no Feature Editor if features not shown	commit \| commitdiff \| tree
2020-03-31	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-03-31	gmungoc	JAL-1889 better (?) wait for Conservation thread	commit \| commitdiff \| tree
2020-03-31	gmungoc	JAL-3210 JAL-3130 merge changes to JSON processing	commit \| commitdiff \| tree
2020-03-31	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-03-30	gmungoc	Merge branch 'Jalview-JS/develop' of https://source...	commit \| commitdiff \| tree
2020-03-30	gmungoc	JAL-3210 debug logging commented out	commit \| commitdiff \| tree
2020-03-30	gmungoc	JAL-3210 test updated for changed signature of SequenceI...	commit \| commitdiff \| tree
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	commit \| commitdiff \| tree
2020-03-19	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-03-19	gmungoc	JAL-3305 don't propagate an empty SelectionGroup to...	commit \| commitdiff \| tree
2020-03-16	gmungoc	JAL-3551 tidying, improved commands, fix Jmol model...	commit \| commitdiff \| tree
2020-03-16	gmungoc	JAL-3551 the correct PyMOL colour by chain command	commit \| commitdiff \| tree
2020-03-13	gmungoc	JAL-3551 working proof of concept of Jalview driving...	commit \| commitdiff \| tree
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