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2018-06-29	Jim Procter	JAL-3048 use FileParse to transfer File to NewickFile...	commit \| commitdiff \| tree
2018-06-29	Jim Procter	JAL-1551 JAL-3048 formatting	commit \| commitdiff \| tree
2018-06-29	Jim Procter	JAL-3048 AlignFrame->File->Load Tree adapted for js	commit \| commitdiff \| tree
2018-06-29	Jim Procter	JAL-3048 refactored Desktop->File->Open to use jalview...	commit \| commitdiff \| tree
2018-06-29	Jim Procter	JAL-3048 jalview.utils.dialogrunner.DialogRunner allows...	commit \| commitdiff \| tree
2018-06-28	Jim Procter	Merge branch 'Jalview-BH/JAL-3048_dialogs' into Jalview...	commit \| commitdiff \| tree
2018-06-28	Jim Procter	JAL-3026 JAL-1551 formatting	commit \| commitdiff \| tree
2018-06-28	Jim Procter	JAL-3048 TODOs for refactoring JalviewFileChooser pattern	commit \| commitdiff \| tree
2018-06-28	Jim Procter	JAL-3048 TODOs for refactoring JalviewFileChooser pattern	commit \| commitdiff \| tree
2018-06-28	Jim Procter	JAL-3048 todo and JAL-3026 disable VCF support	commit \| commitdiff \| tree
2018-06-27	Jim Procter	JAL-3033 tarball from site	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'develop' into Jalview-BH/JAL-3026	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'task/JAL-3042_remove_SimpleDocument_dependency...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3042 remove mention of adjustable search box history...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3042 don't allow user to change default history...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3035 removed jdas in libs documentation and noted...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3033 JAL-3035 remove jdas.jar from .classpath.js	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'develop' into Jalview-BH/JAL-3026	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3035 documentation in 2.11 release notes (and 2...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3035 remove DAS UI documentation	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3035 - jalview-das is no more !	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3035 (unrelated) random XML error in nbbuild.xml	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'Jalview-BH/JAL-3026' into task/JAL-3033_jalvie...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3033 force overwrite for .classpath from .classpath.js	commit \| commitdiff \| tree
2018-06-26	Jim Procter	Merge branch 'Jalview-BH/JAL-3026' into task/JAL-3033_jalvie...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3033 fail if the transpiler isn’t updated from...	commit \| commitdiff \| tree
2018-06-26	Jim Procter	JAL-3033 local build server path for eclipse	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 more copy/git debugging of task	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 copy the right .classpath.js !	commit \| commitdiff \| tree
2018-06-25	Jim Procter	Merge branch 'Jalview-BH/JAL-3026' into task/JAL-3033_jalvie...	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 update the eclipse project before building...	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 custom .classpath for eclipse build	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 try to configure eclipse workspace via property	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 working ant target for headless build of jalviewjs	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 comment about testing if eclipse build completed	commit \| commitdiff \| tree
2018-06-25	Jim Procter	JAL-3033 configure dropins, run eclipse build and copy...	commit \| commitdiff \| tree
2018-06-25	Jim Procter	Merge branch 'Jalview-BH/JAL-3026' into tasks/JAL-3033_jalvi...	commit \| commitdiff \| tree
2018-06-22	Jim Procter	JAL-3033 formatting	commit \| commitdiff \| tree
2018-06-22	Jim Procter	JAL-3033 WIP ant tasks for jalviewjs	commit \| commitdiff \| tree
2018-05-26	Jim Procter	JAL-2999 release date for 2.10.4b1 set for 27th May...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'documentation/JAL-2999_r2104b1' into...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-2992panelHeight' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-1460_dragndropWindows' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'feature/JAL-2994chimeraPath' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 clarify release notes - and mention that shortcuts...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-2994 add a few future release points for good measure...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 temp variable for clearer conditional and...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 javadoc	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-2999 issues resolved (or nearly so) for 2.10.4b1	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 tidied up the use of windows link file parser	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 more complete drag'n'drop debugging info and...	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 process .lnk files dragged to Jalview when...	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 new data flavor for URLs added belt-and-braces...	commit \| commitdiff \| tree
2018-05-23	Jim Procter	fix for JAL-2991 - we could do better :/	commit \| commitdiff \| tree
2018-05-23	Jim Procter	JAL-2999 release notes and version bump for jalview...	commit \| commitdiff \| tree
2018-05-23	Jim Procter	JAL-2895 replace $$Jalview-Version$$ in help.jhm with...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 release notes	commit \| commitdiff \| tree
2018-05-10	Jim Procter	Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 basic test for Description from features with...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 simplified logic and added corner cases for...	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2906 update release date and release notes	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2931 patch IA paths for new build box	commit \| commitdiff \| tree
2018-05-09	Jim Procter	Merge branch 'patch/JAL-2976_vaqua4_fallback' into...	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2976 fixed bad equivalence check and implemented...	commit \| commitdiff \| tree
2018-05-08	Jim Procter	JAL-2321 release notes	commit \| commitdiff \| tree
2018-05-08	Jim Procter	Merge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 patch test to ensure structures are actually...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 ensure default is ‘parseImmediately=true’	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 use configured values for structure derived...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 add secondary structure & temp factor if not...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 use StructureImportSettings singleton settings...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 isParseImmediately() allows the parse() method...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2321 allow JmolParser to be configured before parsing...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2906 apply GPLv3 license source	commit \| commitdiff \| tree
2018-05-07	Jim Procter	JAL-2960 don’t override a swing method and create infinite...	commit \| commitdiff \| tree
2018-05-07	Jim Procter	Merge branch 'releases/Release_2_10_4_Branch' of http...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2906 2.10.4 release for 8th May 2018	commit \| commitdiff \| tree
2018-05-04	Jim Procter	Merge branch 'bug/JAL-2899' into releases/Release_2_10_4_Branch	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2906 removed mention of experimental features,...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2976 patch NPE when trying to open Uniprot FTS	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2929 JAL-2922 release notes	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2976 typo in installAnywhere build for VAqua dependency	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2960 release notes	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2948 transfer features/annotation is now available...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2960 raise the structure view after adding structures...	commit \| commitdiff \| tree
2018-05-04	Jim Procter	JAL-2976 Vaqua fallback release notes JAL-2906	commit \| commitdiff \| tree
2018-05-04	Jim Procter	Merge branch 'patch/JAL-2976_vaqua4_fallback' into...	commit \| commitdiff \| tree
2018-05-02	Jim Procter	JAL-2976 fallback to Vaqua for Macs that don’t work...	commit \| commitdiff \| tree
2018-05-02	Jim Procter	JAL-2976 Vaqua(4) as a dependency	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2899 release notes	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2925 release notes	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for...	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2906 reformat release notes	commit \| commitdiff \| tree
2018-05-01	Jim Procter	JAL-2906 typo	commit \| commitdiff \| tree
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