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2011-09-16	jprocter	fix for JAL-895 - new exampleFile_2_7.jar and logic...	commit \| commitdiff \| tree
2011-09-16	jprocter	numerically ataxic comments.	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-574 added option to enable/disable 'follow selection...	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-940 - removed legacy service options from preferences...	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-468 typo and label length in dialog	commit \| commitdiff \| tree
2011-09-16	jprocter	patch for JAL-935 - warning messages raised when alignment...	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	commit \| commitdiff \| tree
2011-09-16	jprocter	tweak english	commit \| commitdiff \| tree
2011-09-15	jprocter	documentation for new preferences (JAL-234 and web...	commit \| commitdiff \| tree
2011-09-15	jprocter	documentation for JAL-234	commit \| commitdiff \| tree
2011-09-15	jprocter	JAL-860 fixed grammar for one structure vs many structures...	commit \| commitdiff \| tree
2011-09-15	jprocter	JAL-854 tweaked menu layout so services appear before...	commit \| commitdiff \| tree
2011-09-14	jprocter	typo	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-234 - default button to reset min/max colours and...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-934 - refactor to use label font functions	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-934 - refactor to use label font functions	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-934 - standard label font functions	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-931 (related) - utility to split an alignment database...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-931 - groovy test harness code.	commit \| commitdiff \| tree
2011-09-14	jprocter	test data for JAL-701	commit \| commitdiff \| tree
2011-09-14	jprocter	patch for NPE (not clear if NPE is evidence of deeper...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	commit \| commitdiff \| tree
2011-09-14	jprocter	fix for JAL-930	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	commit \| commitdiff \| tree
2011-09-12	jprocter	JAL-927 ensure api method calls that affect GUI state...	commit \| commitdiff \| tree
2011-09-05	jprocter	note about ensuring callers of loadAlignment(..) save...	commit \| commitdiff \| tree
2011-08-30	jprocter	patch for JAL-731	commit \| commitdiff \| tree
2011-08-30	jprocter	patch for JAL-729 - NPE avoided and cut and paste import...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-915 - ensured that exceptions are not raised in...	commit \| commitdiff \| tree
2011-08-30	jprocter	fix for JAL-917 - ensure all sequence strings are made...	commit \| commitdiff \| tree
2011-08-30	jprocter	fix for JAL-917 - ensure all sequence strings are made...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 - conditional to hide the RSBS service editing...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 rsbs service editing	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 JalviewDialog for RSBS service editing pane	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 store/reset .jalview_properties setting for...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 serialise and deserialise multiple rest client...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 - notify user of parsing problems for results...	commit \| commitdiff \| tree
2011-08-30	jprocter	retrieve URL for datasource of packed set	commit \| commitdiff \| tree
2011-08-30	jprocter	ensure parsing errors and 'lack of data' errors are...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 need to URLencode constant values when serializing...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-715 - grammar for warning message.	commit \| commitdiff \| tree
2011-08-29	jprocter	added notes on third party library licencing and updated...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-919, JAL-715 - prototype service editing dialog...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-633, JAL-591 - refactored ArgumentI.getValue from...	commit \| commitdiff \| tree
2011-08-29	jprocter	refactored popup dialog boilerplate code to own class	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-633 simple concrete parameter and option objects...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-633, JAL-591 - refactored ArgumentI.getValue from...	commit \| commitdiff \| tree
2011-08-25	jprocter	constructor only needs GUI container interface	commit \| commitdiff \| tree
2011-08-25	jprocter	JAL-591 - refactored web service parameter dialog to...	commit \| commitdiff \| tree
2011-08-25	jprocter	JAL-715 - better validation logic	commit \| commitdiff \| tree
2011-08-25	jprocter	debug dialog	commit \| commitdiff \| tree
2011-08-25	jprocter	JAL-715 - prevent empty elements being generated	commit \| commitdiff \| tree
2011-08-24	jprocter	JAL-715 dialog for interactively editing a new or existing...	commit \| commitdiff \| tree
2011-08-24	jprocter	new Swing and SWT capable form layout manager - miglayout	commit \| commitdiff \| tree
2011-08-24	jprocter	JAL-715 bugfixes and refactor of parsing code for use...	commit \| commitdiff \| tree
2011-08-24	jprocter	refactor labelled button creator to JvSwingUtils	commit \| commitdiff \| tree
2011-08-23	jprocter	JAL-715 - simple tests and functions for IO of service...	commit \| commitdiff \| tree
2011-08-23	jprocter	JAL-715 - allow rest service attributes to be exported...	commit \| commitdiff \| tree
2011-08-19	jprocter	JAL-908 JAL-912 JAL-516 documented annotation HTML...	commit \| commitdiff \| tree
2011-08-19	jprocter	JAL-908,JAL-701 - patch applet to strip HTML tags from...	commit \| commitdiff \| tree
2011-08-19	jprocter	JAL-908 JAL-701 refactored HTML escape/unescape code...	commit \| commitdiff \| tree
2011-08-18	jprocter	testdata for JAL-701 and JAL-908	commit \| commitdiff \| tree
2011-08-18	jprocter	remove debug message	commit \| commitdiff \| tree
2011-08-18	jprocter	fix for JAL-701 - ensure '<' appears in tooltip in...	commit \| commitdiff \| tree
2011-08-18	jprocter	minor efficiency refactor	commit \| commitdiff \| tree
2011-08-18	jprocter	JAL-907 testdata for JAL-701	commit \| commitdiff \| tree
2011-08-18	jprocter	JAL-907 - test data directory readme	commit \| commitdiff \| tree
2011-08-17	jprocter	JAL-853 use service action attribute to index services...	commit \| commitdiff \| tree
2011-08-17	jprocter	remove any trailing '/' from the URL before validation...	commit \| commitdiff \| tree
2011-08-17	jprocter	avoid NPE race condition when several threads waiting...	commit \| commitdiff \| tree
2011-08-17	jprocter	fix for JAL-888	commit \| commitdiff \| tree
2011-08-17	jprocter	fix for JAL-888	commit \| commitdiff \| tree
2011-08-17	jprocter	JAL-898 - ensure we only remove a clargs progress bar...	commit \| commitdiff \| tree
2011-08-17	jprocter	JAL-813 fix - check whether conservation is applied...	commit \| commitdiff \| tree
2011-08-17	jprocter	JAL-867 - rejigged layout to a single splitpane wide...	commit \| commitdiff \| tree
2011-08-15	jprocter	JAL-750 automaticScrolling is true by default	commit \| commitdiff \| tree
2011-08-15	jprocter	JAL-750 - automaticScrolling=true by default. Refactored...	commit \| commitdiff \| tree
2011-08-15	jprocter	JAL-747 - warning dialog if Jalview can't resolve filename...	commit \| commitdiff \| tree
2011-08-15	jprocter	JAL-904 added scrollToRow and scrollToColumn methods...	commit \| commitdiff \| tree
2011-08-05	jprocter	example script that will submit a muscle jabaws job...	commit \| commitdiff \| tree
2011-08-05	jprocter	fetch groovy script from URL (JAL-899) and show progress...	commit \| commitdiff \| tree
2011-08-05	jprocter	allow several progress bars on the desktop window ...	commit \| commitdiff \| tree
2011-08-03	jprocter	Merge branch 'master' of https://source.jalview.org...	commit \| commitdiff \| tree
2011-08-03	jprocter	refactored resolvetocodebase code and reused for resource...	commit \| commitdiff \| tree
2011-08-03	jprocter	refactored resolvetocodebase code and reused for resource...	commit \| commitdiff \| tree
2011-08-03	jprocter	fix NPE when applets stop. seems to make the simple...	commit \| commitdiff \| tree
2011-08-03	jprocter	refactor schema to group swing window geometry attributes	commit \| commitdiff \| tree
2011-07-28	jprocter	refer to local default setting for proxy when connecting to	commit \| commitdiff \| tree
2011-07-28	jprocter	added 'since 2.x notes to parameters'. User configurable...	commit \| commitdiff \| tree
2011-07-26	jprocter	example alignment for JAL-862 - removed signal peptides	commit \| commitdiff \| tree
2011-07-25	jprocter	use proper encoding for storing colour as user preference...	commit \| commitdiff \| tree
2011-07-22	jprocter	todo for JAL-860 - associate multiple sequences with...	commit \| commitdiff \| tree
2011-07-22	jprocter	applet min/max annotation shading parameter documentation...	commit \| commitdiff \| tree
2011-07-22	jprocter	ensure propagation of colour change on annotation update...	commit \| commitdiff \| tree
2011-07-22	jprocter	fix NPE when annotation colourgradient is applied	commit \| commitdiff \| tree
2011-07-22	jprocter	code style	commit \| commitdiff \| tree
2011-07-22	jprocter	default parameter for colours in annotation shading...	commit \| commitdiff \| tree
2011-07-22	jprocter	method to get a user default colour (JAL-234)	commit \| commitdiff \| tree
2011-07-21	jprocter	retrieve all sequences matching a particular name ...	commit \| commitdiff \| tree
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