JAL-2326 added setup method for JvOptionPane in all Jalveiw test classes to enable... features/JAL-2326_JOptionPane-refactoring
authortcofoegbu <tcnofoegbu@dundee.ac.uk>
Thu, 24 Nov 2016 17:35:50 +0000 (17:35 +0000)
committertcofoegbu <tcnofoegbu@dundee.ac.uk>
Thu, 24 Nov 2016 17:35:50 +0000 (17:35 +0000)
commit5f4e1e4c330b045e9c8bce28ee132a0fca3834d8
tree6e52ec8840a4cf3c9e5efb721dfa16c3666a822a
parentfee1b781ca14aadea5d112fc554fe14879c787c5
JAL-2326 added setup method for JvOptionPane in all Jalveiw test classes to enable JvOptionPane to run non-interactively
158 files changed:
test/MCview/AtomTest.java
test/MCview/BondTest.java
test/MCview/PDBChainTest.java
test/MCview/PDBfileTest.java
test/MCview/ResidueTest.java
test/jalview/analysis/AAFrequencyTest.java
test/jalview/analysis/AlignSeqTest.java
test/jalview/analysis/AlignmentAnnotationUtilsTest.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/analysis/AnnotationSorterTest.java
test/jalview/analysis/CodingUtilsTest.java
test/jalview/analysis/ConservationTest.java
test/jalview/analysis/CrossRefTest.java
test/jalview/analysis/DnaAlignmentGenerator.java
test/jalview/analysis/DnaTest.java
test/jalview/analysis/FinderTest.java
test/jalview/analysis/GroupingTest.java
test/jalview/analysis/ParsePropertiesTest.java
test/jalview/analysis/RnaTest.java
test/jalview/analysis/SeqsetUtilsTest.java
test/jalview/analysis/SequenceIdMatcherTest.java
test/jalview/analysis/TestAlignSeq.java
test/jalview/analysis/scoremodels/FeatureScoreModelTest.java
test/jalview/bin/ArgsParserTest.java
test/jalview/bin/CacheTest.java
test/jalview/bin/CommandLineOperations.java
test/jalview/bin/JalviewLiteTest.java
test/jalview/commands/EditCommandTest.java
test/jalview/commands/TrimRegionCommandTest.java
test/jalview/controller/AlignViewControllerTest.java
test/jalview/datamodel/AlignedCodonFrameTest.java
test/jalview/datamodel/AlignedCodonIteratorTest.java
test/jalview/datamodel/AlignedCodonTest.java
test/jalview/datamodel/AlignmentAnnotationTests.java
test/jalview/datamodel/AlignmentTest.java
test/jalview/datamodel/AlignmentViewTest.java
test/jalview/datamodel/ColumnSelectionTest.java
test/jalview/datamodel/DBRefEntryTest.java
test/jalview/datamodel/HiddenSequencesTest.java
test/jalview/datamodel/MappingTest.java
test/jalview/datamodel/MappingTypeTest.java
test/jalview/datamodel/MatchTest.java
test/jalview/datamodel/PDBEntryTest.java
test/jalview/datamodel/ResidueCountTest.java
test/jalview/datamodel/SearchResultsTest.java
test/jalview/datamodel/SeqCigarTest.java
test/jalview/datamodel/SequenceDummyTest.java
test/jalview/datamodel/SequenceFeatureTest.java
test/jalview/datamodel/SequenceTest.java
test/jalview/datamodel/xdb/embl/EmblEntryTest.java
test/jalview/datamodel/xdb/embl/EmblFileTest.java
test/jalview/ext/android/SparseIntArrayTest.java
test/jalview/ext/android/SparseShortArrayTest.java
test/jalview/ext/ensembl/EnsemblCdnaTest.java
test/jalview/ext/ensembl/EnsemblCdsTest.java
test/jalview/ext/ensembl/EnsemblGeneTest.java
test/jalview/ext/ensembl/EnsemblGenomeTest.java
test/jalview/ext/ensembl/EnsemblProteinTest.java
test/jalview/ext/ensembl/EnsemblSeqProxyTest.java
test/jalview/ext/ensembl/EnsemblXrefTest.java
test/jalview/ext/htsjdk/TestHtsContigDb.java
test/jalview/ext/jmol/JmolCommandsTest.java
test/jalview/ext/jmol/JmolParserTest.java
test/jalview/ext/jmol/JmolViewerTest.java
test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java
test/jalview/ext/paradise/TestAnnotate3D.java
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
test/jalview/ext/rbvi/chimera/ChimeraConnect.java
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
test/jalview/ext/so/SequenceOntologyTest.java
test/jalview/fts/core/FTSRestClientTest.java
test/jalview/fts/service/pdb/PDBFTSPanelTest.java
test/jalview/fts/service/pdb/PDBFTSRestClientTest.java
test/jalview/gui/AlignFrameTest.java
test/jalview/gui/AlignViewportTest.java
test/jalview/gui/AnnotationChooserTest.java
test/jalview/gui/AppVarnaTest.java
test/jalview/gui/FontChooserTest.java
test/jalview/gui/HelpTest.java
test/jalview/gui/JAL1353bugdemo.java
test/jalview/gui/JvOptionPaneTest.java
test/jalview/gui/JvSwingUtilsTest.java
test/jalview/gui/PaintRefresherTest.java
test/jalview/gui/PopupMenuTest.java
test/jalview/gui/ProgressBarTest.java
test/jalview/gui/SequenceRendererTest.java
test/jalview/gui/StructureChooserTest.java
test/jalview/gui/StructureViewerTest.java
test/jalview/io/AnnotatedPDBFileInputTest.java
test/jalview/io/AnnotationFileIOTest.java
test/jalview/io/BioJsHTMLOutputTest.java
test/jalview/io/CrossRef2xmlTests.java
test/jalview/io/FeaturesFileTest.java
test/jalview/io/FileIOTester.java
test/jalview/io/FormatAdapterTest.java
test/jalview/io/HtmlFileTest.java
test/jalview/io/IdentifyFileTest.java
test/jalview/io/JSONFileTest.java
test/jalview/io/Jalview2xmlBase.java
test/jalview/io/Jalview2xmlTests.java
test/jalview/io/JalviewExportPropertiesTests.java
test/jalview/io/NewickFileTests.java
test/jalview/io/PfamFormatInputTest.java
test/jalview/io/PhylipFileTests.java
test/jalview/io/RNAMLfileTest.java
test/jalview/io/SequenceAnnotationReportTest.java
test/jalview/io/StockholmFileTest.java
test/jalview/io/TCoffeeScoreFileTest.java
test/jalview/io/gff/ExonerateHelperTest.java
test/jalview/io/gff/Gff3HelperTest.java
test/jalview/io/gff/GffHelperBaseTest.java
test/jalview/io/gff/GffHelperFactoryTest.java
test/jalview/io/gff/GffTests.java
test/jalview/io/gff/InterProScanHelperTest.java
test/jalview/schemes/DnaCodonTests.java
test/jalview/schemes/FeatureColourTest.java
test/jalview/schemes/ResidueColourSchemeTest.java
test/jalview/schemes/ResiduePropertiesTest.java
test/jalview/schemes/ScoreMatrixPrinter.java
test/jalview/schemes/UserColourSchemeTest.java
test/jalview/structure/Mapping.java
test/jalview/structure/StructureSelectionManagerTest.java
test/jalview/structures/models/AAStructureBindingModelTest.java
test/jalview/util/ArrayUtilsTest.java
test/jalview/util/CaseInsensitiveStringTest.java
test/jalview/util/ColorUtilsTest.java
test/jalview/util/ComparisonTest.java
test/jalview/util/DBRefUtilsTest.java
test/jalview/util/DnaUtilsTest.java
test/jalview/util/FormatTest.java
test/jalview/util/MapListTest.java
test/jalview/util/MappingUtilsTest.java
test/jalview/util/ParseHtmlBodyAndLinksTest.java
test/jalview/util/PlatformTest.java
test/jalview/util/QuickSortTest.java
test/jalview/util/ShiftListTest.java
test/jalview/util/SparseCountTest.java
test/jalview/util/StringUtilsTest.java
test/jalview/util/UrlLinkTest.java
test/jalview/viewmodel/styles/ViewStyleTest.java
test/jalview/workers/AlignCalcManagerTest.java
test/jalview/ws/PDBSequenceFetcherTest.java
test/jalview/ws/SequenceFetcherTest.java
test/jalview/ws/dbsources/UniprotTest.java
test/jalview/ws/dbsources/XfamFetcherTest.java
test/jalview/ws/ebi/EBIFetchClientTest.java
test/jalview/ws/gui/Jws2ParamView.java
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
test/jalview/ws/jabaws/MinJabawsClientTests.java
test/jalview/ws/jabaws/RNAStructExportImport.java
test/jalview/ws/jws2/ParameterUtilsTest.java
test/jalview/ws/rest/RestClientTest.java
test/jalview/ws/rest/ShmmrRSBSService.java
test/jalview/ws/seqfetcher/DasSequenceFetcher.java
test/jalview/ws/seqfetcher/DbRefFetcherTest.java
test/jalview/ws/sifts/SiftsClientTest.java