JAL-1805 groups=Functional added where missing

diff --git a/test/jalview/ext/htsjdk/TestHtsContigDb.java b/test/jalview/ext/htsjdk/TestHtsContigDb.java
index f8c53b0..bdc14db 100644 (file)
--- a/test/jalview/ext/htsjdk/TestHtsContigDb.java
+++ b/test/jalview/ext/htsjdk/TestHtsContigDb.java
@@ -33,7 +33,7 @@ import org.testng.annotations.Test;
  */
 public class TestHtsContigDb
 {
-  @Test
+  @Test(groups = "Functional")
   public final void testHTSReferenceSequence() throws Exception
   {
     HtsContigDb remmadb = new HtsContigDb("REEMADB", new File(

diff --git a/test/jalview/gui/AlignFrameTest.java b/test/jalview/gui/AlignFrameTest.java
index 316d9af..b2ef3f7 100644 (file)
--- a/test/jalview/gui/AlignFrameTest.java
+++ b/test/jalview/gui/AlignFrameTest.java
@@ -37,7 +37,7 @@ import org.testng.annotations.Test;
 public class AlignFrameTest
 {
 
-  @Test
+  @Test(groups = "Functional")
   public void testHideFeatureColumns()
   {
     SequenceI seq1 = new Sequence("Seq1", "ABCDEFGHIJ");

diff --git a/test/jalview/gui/AppVarnaTest.java b/test/jalview/gui/AppVarnaTest.java
index 5bc0ddf..92770d5 100644 (file)
--- a/test/jalview/gui/AppVarnaTest.java
+++ b/test/jalview/gui/AppVarnaTest.java
@@ -28,7 +28,7 @@ import org.testng.annotations.Test;
 
 public class AppVarnaTest
 {
-  @Test
+  @Test(groups = "Functional")
   public void testReplaceOddGaps()
   {
     String struct = "{(<]}>)";

diff --git a/test/jalview/io/PfamFormatInputTest.java b/test/jalview/io/PfamFormatInputTest.java
index 0eaf94b..fb99865 100644 (file)
--- a/test/jalview/io/PfamFormatInputTest.java
+++ b/test/jalview/io/PfamFormatInputTest.java
@@ -29,20 +29,20 @@ import org.testng.annotations.Test;
 
 public class PfamFormatInputTest
 {
-  @Test
+  @Test(groups = "Functional")
   public void testPfamFormatNoLimits() throws IOException
   {
-    AlignmentI al = new jalview.io.AppletFormatAdapter().readFile("ASEQ"
+    AlignmentI al = new AppletFormatAdapter().readFile("ASEQ"
             + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
     Assert.assertTrue(al.hasValidSequence(),
             "Didn't extract limits from PFAM ID");
   }
 
-  @Test
+  @Test(groups = "Functional")
   public void testPfamFormatValidLimits() throws IOException
   {
-    AlignmentI al = new jalview.io.AppletFormatAdapter().readFile(
+    AlignmentI al = new AppletFormatAdapter().readFile(
             "ASEQ/15-25" + '\t' + "...--FFAFAFF--",
             AppletFormatAdapter.PASTE, "PFAM");
     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");