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JAL-629 Moved additional CommandLineOperationsNG tests to testTask1
[jalview.git] / examples /
2023-05-02 Ben SoaresJAL-629 Changed --newframe and --allframes to --new... tree | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... tree | commitdiff
2023-04-12 Ben SoaresJAL-629 deleted test output file from repo tree | commitdiff
2023-04-12 Ben SoaresJAL-629 DON'T use quotation marks in argfiles as they... tree | commitdiff
2023-04-05 Ben SoaresJAL-629 Tests for FileUtils. Tidying counter substituti... tree | commitdiff
2023-04-04 Ben SoaresJAL-629 More consistent printing of --arguments. Exampl... tree | commitdiff
2023-03-25 Ben SoaresJAL-629 improvements to argparser toString. Improvement... tree | commitdiff
2023-03-10 Ben SoaresJAL-629 start of tests and more examples tree | commitdiff
2023-02-27 Ben SoaresJAL-629 add AF examples for FER1_SPIOL. Link and displa... tree | commitdiff
2023-02-27 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-02-26 Ben SoaresJAL-629 PAE matrix file guesstimate from filename tree | commitdiff
2023-02-24 James ProcterJAL-629 JAL-4124 JAL-3855 test to check we can import... tree | commitdiff
2023-02-23 Ben SoaresJAL-629 nf-core sample alignment files and a2m versions tree | commitdiff
2023-02-03 Ben SoaresJAL-629 "updated" json-simple tree | commitdiff
2023-01-26 Ben SoaresJAL-629 example files from nf-core tree | commitdiff
2023-01-11 Ben SoaresJAL-629 added Alphafold cif, pdb and PAE json files... tree | commitdiff
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments tree | commitdiff
2021-08-11 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into feature... tree | commitdiff
2020-10-27 Jim Procterupdate test for JAL-3763 redact shared DS sequences... tree | commitdiff
2020-09-22 Jim ProcterJAL-3748 test data for SplitFrameTest tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-03 Jim ProcterJAL-3547 groovy script to get the conservation sequence... tree | commitdiff
2020-02-17 Jim ProcterJAL-3536 failing test and test data tree | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'features/JAL-2349_matrixvis' into merge... tree | commitdiff
2019-05-27 gmungocJAL-3141 test file in test folder not examples tree | commitdiff
2019-04-26 Jim ProcterJAL-3150 examples/exampleFile.jvp for updated manual... tree | commitdiff
2019-03-25 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-03-25 gmungocJAL-3127 scripts updated for method signature change tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing... tree | commitdiff
2018-12-01 hansonradding jaxbtest.jvx and directing JalviewJS2.java to... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... tree | commitdiff
2018-08-28 Jim ProcterJAL-3003 different coloured borders in demo annotation... tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-31 bsoaresStockholm file for test tree | commitdiff
2018-07-02 gmungocJAL-3026 reinstated deleted file tree | commitdiff
2018-07-02 hansonrJAL-3032 JTable work; JSUtil.jQuery object; drag-drop; tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2017-12-08 gmungocJAL-2843 example filters added tree | commitdiff
2017-12-01 Jim ProcterMerge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn... tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... tree | commitdiff
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available tree | commitdiff
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection... tree | commitdiff
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... tree | commitdiff
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score... tree | commitdiff
2017-10-18 Jim ProcterJAL-2781 example fragment with missing backbone atoms... tree | commitdiff
2017-10-18 Jim ProcterJAL-2781 example fragment with missing backbone atoms... tree | commitdiff
2017-10-18 Jim ProcterJAL-2780 example fragment with negative RESNUM tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-09 Jim ProcterJAL-2418 JAL-2398 JAL-2397 simpler documentation for... tree | commitdiff
2017-08-09 Jim ProcterJAL-2397 JAL-2398 documentation for reinstating legacy... tree | commitdiff
2017-08-07 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for... tree | commitdiff
2017-08-04 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example... tree | commitdiff
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-08-03 gmungocJAL-2500 JAL-2365 feature colour "gray" _not_ "lightgra... tree | commitdiff
2017-08-03 gmungocJAL-2500 JAL-2365 lightGray changed to lightgray for... tree | commitdiff
2017-08-03 gmungocJAL-2500 JAL-2365 lightGray changed to gray in example... tree | commitdiff
2017-08-02 Jim ProcterMerge branch 'bug/JAL-2321' into bug/JAL-2321_merged tree | commitdiff
2017-08-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-28 gmungocJAL-2631 make minimum colour not white tree | commitdiff
2017-07-28 gmungocJAL-2631 add graduated colour kdH features to example tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-09 Jim ProcterMerge branch 'develop' into features/JAL-2349_matrixvis tree | commitdiff
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved... tree | commitdiff
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 applet doc for showOccupancy parameter tree | commitdiff
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... tree | commitdiff
2017-02-23 kiramtJAL-2388 Unit tests in progress tree | commitdiff
2017-02-10 Jim ProcterMerge branch 'develop' into spike/matrix_annot tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-07 gmungocJAL-2397 flag provided for 2.10.1 PCA gap calculation... tree | commitdiff
2017-02-07 gmungocJAL-2398 include 'compatibility mode' for C->R score... tree | commitdiff
2017-02-07 gmungocJAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculat... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-18 gmungocJAL-2228 removed FeatureCounterI in favour of FeatureSe... tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-16 Jim ProcterJAL-2349 JAL-2382 example contact prediction in RR... tree | commitdiff
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea... tree | commitdiff
2017-01-11 gmungocJAL-2344 groovy script that registers a new file format tree | commitdiff
2017-01-09 gmungocJAL-2371 pull up isNucleotide to SequenceCollectionI tree | commitdiff
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