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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
MCview
/
2010-06-11
jprocter
patch for JAL-556 - more robust mapping of sequence...
tree
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commitdiff
2010-06-11
jprocter
patch for JAL-556
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2009-10-30
jprocter
na pdb: recognise NA residue names
tree
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commitdiff
2009-10-30
jprocter
na pdb: detect P backbone
tree
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commitdiff
2009-10-12
jprocter
ensure id string doesn't get set to the empty string...
tree
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commitdiff
2009-06-08
jprocter
apply gpl development license
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commitdiff
2009-06-08
jprocter
patch for wierd format header lines and apply gpl devel...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2008-01-29
jprocter
FileParse object can be re-used to read different files...
tree
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commitdiff
2007-11-16
jprocter
refactored ebi soap client and AbstractSequenceFetcher...
tree
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commitdiff
2007-10-27
jprocter
enabled platform dependent embedding of menuBar with...
tree
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commitdiff
2007-07-13
jprocter
refactor
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commitdiff
2007-06-17
jprocter
fix modeller generated PDB file reading bug (missing...
tree
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commitdiff
2007-05-14
amwaterhouse
Invert mouse drag controls
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commitdiff
2007-05-08
amwaterhouse
mirror image recitified
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commitdiff
2007-05-07
amwaterhouse
Dont use gold colouring for highlight
tree
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commitdiff
2007-05-07
amwaterhouse
Use PDB id for grouping mappings
tree
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commitdiff
2007-05-07
amwaterhouse
PDBViewer available if necessary
tree
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commitdiff
2007-05-01
amwaterhouse
set chains available
tree
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commitdiff
2007-04-30
amwaterhouse
setVisible replaces show
tree
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commitdiff
2007-04-27
amwaterhouse
FeatureRenderer mixups fixed
tree
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commitdiff
2007-04-27
amwaterhouse
Remove system.out AppletPDBViewer.java
tree
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commitdiff
2007-04-27
amwaterhouse
Trouble with featureRenderers fixed
tree
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commitdiff
2007-04-25
jprocter
transfer of residue numbering as alignment annotation
tree
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commitdiff
2007-04-23
amwaterhouse
getColour method added
tree
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commitdiff
2007-04-20
jprocter
adds annotation for display (with flag to set alignment...
tree
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commitdiff
2007-04-19
jprocter
tfactor annotation description includes full sequenceID
tree
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commitdiff
2007-04-19
jprocter
tfactor and occupancy extracted from PDB file, and...
tree
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commitdiff
2007-04-18
amwaterhouse
Redundant code commented out
tree
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commitdiff
2007-04-11
amwaterhouse
featureAdded not in applet
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commitdiff
2007-04-02
jprocter
fr==null check.
tree
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commitdiff
2007-03-26
jprocter
PDB residue numberings transfered and alignment view...
tree
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commitdiff
2007-03-22
amwaterhouse
Commented out userDefColours for compilation. Class...
tree
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commitdiff
2007-02-27
amwaterhouse
No longer use ref to seqcanvas for painting
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commitdiff
2007-02-27
amwaterhouse
blank space for chain name if empty
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commitdiff
2007-02-27
amwaterhouse
keep record of atomIndeX
tree
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commitdiff
2007-02-12
amwaterhouse
>0 rather than -1 check
tree
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commitdiff
2007-02-12
jprocter
tranfer pdbresno features to dataset sequence.
tree
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commitdiff
2007-02-07
amwaterhouse
formatting
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commitdiff
2007-02-01
amwaterhouse
find colours uncommented
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commitdiff
2007-02-01
amwaterhouse
sequence.getStart() in findTrueIndex
tree
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commitdiff
2007-01-23
jprocter
transfer resnum features now returns features (could...
tree
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commitdiff
2007-01-19
jprocter
PDBChain maintains reference to dataset of sequences...
tree
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commitdiff
2007-01-18
jprocter
transfer and update of sequenceFeatures for associated...
tree
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commitdiff
2007-01-18
jprocter
transfer and update of sequenceFeatures for associated...
tree
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commitdiff
2007-01-18
jprocter
fixed last-residue bug and added sequence feature creat...
tree
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commitdiff
2007-01-18
jprocter
added resNum+insCode string field for truly unambiguous...
tree
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commitdiff
2007-01-17
jprocter
made atom attributes public (rather than put in get...
tree
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commitdiff
2006-12-21
amwaterhouse
getSequenceAsString
tree
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commitdiff
2006-12-05
amwaterhouse
sequence is char []
tree
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commitdiff
2006-11-20
amwaterhouse
Memory check on PDB file
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commitdiff
2006-08-21
amwaterhouse
header updated
tree
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commitdiff
2006-08-11
amwaterhouse
Printstacktrace
tree
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commitdiff
2006-08-11
amwaterhouse
inFile might be null if PDB was pasted
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commitdiff
2006-07-27
amwaterhouse
NOR the <pre> tabs
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commitdiff
2006-07-27
amwaterhouse
Save PDB file to disk
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commitdiff
2006-07-26
amwaterhouse
PDB file MUST have an id
tree
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commitdiff
2006-07-26
jprocter
Ignore list created
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commitdiff
2006-07-25
amwaterhouse
Extends AlignFile, dataset has PDBEntry added
tree
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commitdiff
2006-07-25
amwaterhouse
Can load PDB file from disk
tree
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commitdiff
2006-07-07
amwaterhouse
Changeable background colour
tree
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commitdiff
2006-07-07
amwaterhouse
Make sure bond has a colour
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commitdiff
2006-07-07
amwaterhouse
Make sure atom has a colour
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commitdiff
2006-06-23
amwaterhouse
++ --
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commitdiff
2006-03-24
amwaterhouse
Has its own featureRenderer
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commitdiff
2006-03-24
amwaterhouse
ZSort no longer static
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commitdiff
2006-03-24
amwaterhouse
Has own featurerenderer
tree
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commitdiff
2006-03-08
amwaterhouse
Can read from zip file
tree
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commitdiff
2006-03-01
jprocter
propagate SearchResult object use to MCView's highlight...
tree
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commitdiff
2005-12-22
amwaterhouse
Jar file 20% smaller
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commitdiff
2005-12-09
jprocter
fixed pdbentry creation and multiple uniprot or pdb...
tree
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commitdiff
2005-12-09
amwaterhouse
Applet Structure viewer has all colours available
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commitdiff
2005-12-09
amwaterhouse
All colours added to Structure viewer
tree
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commitdiff
2005-12-08
amwaterhouse
SeqColoursReady
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commitdiff
2005-12-08
amwaterhouse
SeqColoursReady boolean added
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commitdiff
2005-12-08
amwaterhouse
EqualsignoreCase
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commitdiff
2005-12-07
amwaterhouse
License added to new files
tree
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commitdiff
2005-12-06
amwaterhouse
PDB structure viewer updated
tree
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commitdiff
2005-09-30
amwaterhouse
Remove redundancy from Eclipse
tree
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commitdiff
2005-06-15
amwaterhouse
Tooltip changed
tree
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commitdiff
2005-06-08
amwaterhouse
Formatted source
tree
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commitdiff
2005-06-08
amwaterhouse
GPL license added
tree
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commitdiff
2005-06-08
amwaterhouse
*** empty log message ***
tree
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
tree
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commitdiff
2005-05-05
amwaterhouse
pdb end seq and startseq determined here
tree
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commitdiff
2005-05-05
amwaterhouse
colour by sequence just about works
tree
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commitdiff
2005-05-05
amwaterhouse
addelement replaces add
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commitdiff
2005-03-23
amwaterhouse
drawableSequence removed
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commitdiff
2005-02-04
amwaterhouse
SequenceFeature display added
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commitdiff
2004-11-18
amwaterhouse
New files
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commitdiff