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[jalview.git] / src / jalview / analysis /
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-06-03 jprocterReinstated 'create tree from selected region only'...
2005-06-02 jprocterminor changes to try and make jalopy happy
2005-05-30 jprocterChanged sortByPID to use the gapped PID function.
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-24 jprocterextended the UpdatePlaceholders to check for any new...
2005-05-24 jprocteradded PropertyChangeListeners for alignviewport.alignme...
2005-05-24 jprocterseveral ordering bug fixes.
2005-05-23 jprocterUgly but improved recovery of sequence names, starts...
2005-05-22 jprocterAdded alignment ordering option to 'Sort by' and implem...
2005-05-20 jprocterVarious sort methods added and bugs fixed (coping with...
2005-05-20 jprocteradded tree node property for sequence placeholders.
2005-05-19 amwaterhousetoString () method added
2005-05-05 jprocterMoved tree leafname to alignment set matching into...
2005-05-05 amwaterhousemoved to jalview.io
2005-05-03 amwaterhouse1.1 compatible
2005-05-03 amwaterhousefindKmers and fetchSequenceFeatures removed
2005-04-16 amwaterhouseAlignPanel RefreshPanels put into paintComponent
2005-04-13 jprocterGap characters are now properly detected in the conserv...
2005-04-11 jprocteradded the alignment quality calculation from the old...
2005-04-08 jprocterremember: do not check in quick bug fixes that you...
2005-04-08 jprocterAlignment quality with funky coloured histograms.
2005-04-07 amwaterhousecheckfor gap characters
2005-03-23 amwaterhousedrawableSequence removed
2005-03-18 jprocterNew constructors for turning NewickFile objects into...
2005-03-09 amwaterhousedont perform blast search at present
2005-03-08 jprocterfixed so that alignment percentage ID is used for dista...
2005-02-11 amwaterhousemust add all features even if start and end res are...
2005-02-11 amwaterhousebug fixed if featureEnd is beyond end of sequence
2005-02-08 amwaterhouseLooks for missing ids using BlastClient
2005-02-07 amwaterhouseProperties bug fixed
2005-02-07 amwaterhouseNow displays sequence features
2005-02-07 amwaterhouseNew class for fetching sequence features
2005-02-04 amwaterhouseSequenceFeature display added
2005-01-12 jprocterrandom change 3
2005-01-12 jprocteranother dummy.
2005-01-12 jprocterirrelevant comment.
2004-12-15 amwaterhouseisGap method added to utils
2004-12-14 amwaterhouseHastable is not used anywhere
2004-12-14 amwaterhouseHashtable size must allow for total-start
2004-12-14 amwaterhouseChoosing sort again reverses the sort order
2004-11-18 amwaterhousemake variable public
2004-11-16 amwaterhouseRemoved spaces
2004-11-02 amwaterhouseJalview Imported Sources start