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Jalview Imported Sources start
authoramwaterhouse <Andrew Waterhouse>
Tue, 2 Nov 2004 10:46:54 +0000 (10:46 +0000)
committeramwaterhouse <Andrew Waterhouse>
Tue, 2 Nov 2004 10:46:54 +0000 (10:46 +0000)
commit1ecf6419aba86993b3c223bf5ec0fa79427baf85
tree69daf7210de35c64b2fd6b248e28f3116bab71betree | snapshot
Jalview Imported Sources
110 files changed:
BartonGroupBanner.gif [new file with mode: 0755] blob
JalviewX.jpx [new file with mode: 0755] blob
src/jalview/analysis/AAFrequency.java [new file with mode: 0755] blob
src/jalview/analysis/AlignSeq.java [new file with mode: 0755] blob
src/jalview/analysis/AlignmentSorter.java [new file with mode: 0755] blob
src/jalview/analysis/AlignmentUtil.java [new file with mode: 0755] blob
src/jalview/analysis/CompareAlignments.java [new file with mode: 0755] blob
src/jalview/analysis/Conservation.java [new file with mode: 0755] blob
src/jalview/analysis/NJTree.java [new file with mode: 0755] blob
src/jalview/analysis/PCA.java [new file with mode: 0755] blob
src/jalview/bin/Cache.java [new file with mode: 0755] blob
src/jalview/bin/Jalview.java [new file with mode: 0755] blob
src/jalview/datamodel/Alignment.java [new file with mode: 0755] blob
src/jalview/datamodel/AlignmentI.java [new file with mode: 0755] blob
src/jalview/datamodel/BinaryNode.java [new file with mode: 0755] blob
src/jalview/datamodel/BinarySequence.java [new file with mode: 0755] blob
src/jalview/datamodel/FeaturePair.java [new file with mode: 0755] blob
src/jalview/datamodel/Sequence.java [new file with mode: 0755] blob
src/jalview/datamodel/SequenceFeature.java [new file with mode: 0755] blob
src/jalview/datamodel/SequenceGroup.java [new file with mode: 0755] blob
src/jalview/datamodel/SequenceI.java [new file with mode: 0755] blob
src/jalview/datamodel/SequenceNode.java [new file with mode: 0755] blob
src/jalview/datamodel/SequencePoint.java [new file with mode: 0755] blob
src/jalview/gui/AlignFrame.java [new file with mode: 0755] blob
src/jalview/gui/AlignViewport.java [new file with mode: 0755] blob
src/jalview/gui/AlignmentPanel.java [new file with mode: 0755] blob
src/jalview/gui/BlockRenderer.java [new file with mode: 0755] blob
src/jalview/gui/ColourKey.java [new file with mode: 0755] blob
src/jalview/gui/ColumnSelection.java [new file with mode: 0755] blob
src/jalview/gui/CpGRenderer.java [new file with mode: 0755] blob
src/jalview/gui/CutAndPasteTransfer.java [new file with mode: 0755] blob
src/jalview/gui/Desktop.java [new file with mode: 0755] blob
src/jalview/gui/DrawableSequence.java [new file with mode: 0755] blob
src/jalview/gui/FeatureRenderer.java [new file with mode: 0755] blob
src/jalview/gui/GraphRenderer.java [new file with mode: 0755] blob
src/jalview/gui/IdCanvas.java [new file with mode: 0755] blob
src/jalview/gui/IdPanel.java [new file with mode: 0755] blob
src/jalview/gui/PCAPanel.java [new file with mode: 0755] blob
src/jalview/gui/PaintRefresher.java [new file with mode: 0755] blob
src/jalview/gui/PairwiseAlignPanel.java [new file with mode: 0755] blob
src/jalview/gui/RendererI.java [new file with mode: 0755] blob
src/jalview/gui/RotatableCanvas.java [new file with mode: 0755] blob
src/jalview/gui/ScaleCanvas.java [new file with mode: 0755] blob
src/jalview/gui/ScalePanel.java [new file with mode: 0755] blob
src/jalview/gui/ScorePanel.java [new file with mode: 0755] blob
src/jalview/gui/Selection.java [new file with mode: 0755] blob
src/jalview/gui/SeqCanvas.java [new file with mode: 0755] blob
src/jalview/gui/SeqPanel.java [new file with mode: 0755] blob
src/jalview/gui/SequenceRenderer.java [new file with mode: 0755] blob
src/jalview/gui/TreeCanvas.java [new file with mode: 0755] blob
src/jalview/gui/TreePanel.java [new file with mode: 0755] blob
src/jalview/gui/UserDefinedColours.java [new file with mode: 0755] blob
src/jalview/io/AlignFile.java [new file with mode: 0755] blob
src/jalview/io/BLCFile.java [new file with mode: 0755] blob
src/jalview/io/ClustalFile.java [new file with mode: 0755] blob
src/jalview/io/FastaFile.java [new file with mode: 0755] blob
src/jalview/io/FileParse.java [new file with mode: 0755] blob
src/jalview/io/FileProperties.java [new file with mode: 0755] blob
src/jalview/io/FormatAdapter.java [new file with mode: 0755] blob
src/jalview/io/FormatFactory.java [new file with mode: 0755] blob
src/jalview/io/FormatProperties.java [new file with mode: 0755] blob
src/jalview/io/FormatProperty.java [new file with mode: 0755] blob
src/jalview/io/FormatPropertyVector.java [new file with mode: 0755] blob
src/jalview/io/HTMLOutput.java [new file with mode: 0755] blob
src/jalview/io/IdentifyFile.java [new file with mode: 0755] blob
src/jalview/io/MSFfile.java [new file with mode: 0755] blob
src/jalview/io/OutputGenerator.java [new file with mode: 0755] blob
src/jalview/io/PIRFile.java [new file with mode: 0755] blob
src/jalview/io/PfamFile.java [new file with mode: 0755] blob
src/jalview/io/PostscriptProperties.java [new file with mode: 0755] blob
src/jalview/io/SequenceFeatureSourceI.java [new file with mode: 0755] blob
src/jalview/jbgui/GAlignFrame.java [new file with mode: 0755] blob
src/jalview/jbgui/GAlignmentPanel.java [new file with mode: 0755] blob
src/jalview/jbgui/GColourKey.java [new file with mode: 0755] blob
src/jalview/jbgui/GCutAndPasteTransfer.java [new file with mode: 0755] blob
src/jalview/jbgui/GDesktop.java [new file with mode: 0755] blob
src/jalview/jbgui/GPCAPanel.java [new file with mode: 0755] blob
src/jalview/jbgui/GPairwiseAlignPanel.java [new file with mode: 0755] blob
src/jalview/jbgui/GTreePanel.java [new file with mode: 0755] blob
src/jalview/jbgui/GUserDefinedColours.java [new file with mode: 0755] blob
src/jalview/math/Matrix.java [new file with mode: 0755] blob
src/jalview/math/RotatableMatrix.java [new file with mode: 0755] blob
src/jalview/schemes/Blosum62ColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/BuriedColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/ClustalxColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/ColourProperties.java [new file with mode: 0755] blob
src/jalview/schemes/ColourSchemeFactory.java [new file with mode: 0755] blob
src/jalview/schemes/ColourSchemeI.java [new file with mode: 0755] blob
src/jalview/schemes/ColourSchemeProperty.java [new file with mode: 0755] blob
src/jalview/schemes/ColourSchemePropertyVector.java [new file with mode: 0755] blob
src/jalview/schemes/HelixColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/HydrophobicColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/PIDColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/ResidueColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/ResidueProperties.java [new file with mode: 0755] blob
src/jalview/schemes/ScoreColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/SecondaryColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/StrandColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/TaylorColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/TurnColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/UserColourScheme.java [new file with mode: 0755] blob
src/jalview/schemes/ZappoColourScheme.java [new file with mode: 0755] blob
src/jalview/util/BrowserLauncher.java [new file with mode: 0755] blob
src/jalview/util/Comparison.java [new file with mode: 0755] blob
src/jalview/util/ErrorLog.java [new file with mode: 0755] blob
src/jalview/util/Format.java [new file with mode: 0755] blob
src/jalview/util/Format.save [new file with mode: 0755] blob
src/jalview/util/ListenList.java [new file with mode: 0755] blob
src/jalview/util/QuickSort.java [new file with mode: 0755] blob
src/jalview/util/WindowUtil.java [new file with mode: 0755] blob