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JAL-1950 structuring methods and note on parsing flat-files
[jalview.git]
/
src
/
jalview
/
analysis
/
2005-08-12
jprocter
fixed leafMapping bug for Id's like SequenceX (where...
tree
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
tree
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commitdiff
2005-06-30
amwaterhouse
Not used in Jalview
tree
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commitdiff
2005-06-16
amwaterhouse
Sort Groups modified
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commitdiff
2005-06-10
amwaterhouse
Remove imports
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-06-03
jprocter
Reinstated 'create tree from selected region only'...
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commitdiff
2005-06-02
jprocter
minor changes to try and make jalopy happy
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commitdiff
2005-05-30
jprocter
Changed sortByPID to use the gapped PID function.
tree
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
tree
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commitdiff
2005-05-24
jprocter
extended the UpdatePlaceholders to check for any new...
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commitdiff
2005-05-24
jprocter
added PropertyChangeListeners for alignviewport.alignme...
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commitdiff
2005-05-24
jprocter
several ordering bug fixes.
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commitdiff
2005-05-23
jprocter
Ugly but improved recovery of sequence names, starts...
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commitdiff
2005-05-22
jprocter
Added alignment ordering option to 'Sort by' and implem...
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commitdiff
2005-05-20
jprocter
Various sort methods added and bugs fixed (coping with...
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commitdiff
2005-05-20
jprocter
added tree node property for sequence placeholders.
tree
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commitdiff
2005-05-19
amwaterhouse
toString () method added
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commitdiff
2005-05-05
jprocter
Moved tree leafname to alignment set matching into...
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commitdiff
2005-05-05
amwaterhouse
moved to jalview.io
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commitdiff
2005-05-03
amwaterhouse
1.1 compatible
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commitdiff
2005-05-03
amwaterhouse
findKmers and fetchSequenceFeatures removed
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commitdiff
2005-04-16
amwaterhouse
AlignPanel RefreshPanels put into paintComponent
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commitdiff
2005-04-13
jprocter
Gap characters are now properly detected in the conserv...
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commitdiff
2005-04-11
jprocter
added the alignment quality calculation from the old...
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commitdiff
2005-04-08
jprocter
remember: do not check in quick bug fixes that you...
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commitdiff
2005-04-08
jprocter
Alignment quality with funky coloured histograms.
tree
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commitdiff
2005-04-07
amwaterhouse
checkfor gap characters
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commitdiff
2005-03-23
amwaterhouse
drawableSequence removed
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commitdiff
2005-03-18
jprocter
New constructors for turning NewickFile objects into...
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commitdiff
2005-03-09
amwaterhouse
dont perform blast search at present
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commitdiff
2005-03-08
jprocter
fixed so that alignment percentage ID is used for dista...
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commitdiff
2005-02-11
amwaterhouse
must add all features even if start and end res are...
tree
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commitdiff
2005-02-11
amwaterhouse
bug fixed if featureEnd is beyond end of sequence
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commitdiff
2005-02-08
amwaterhouse
Looks for missing ids using BlastClient
tree
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commitdiff
2005-02-07
amwaterhouse
Properties bug fixed
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commitdiff
2005-02-07
amwaterhouse
Now displays sequence features
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commitdiff
2005-02-07
amwaterhouse
New class for fetching sequence features
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commitdiff
2005-02-04
amwaterhouse
SequenceFeature display added
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commitdiff
2005-01-12
jprocter
random change 3
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commitdiff
2005-01-12
jprocter
another dummy.
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commitdiff
2005-01-12
jprocter
irrelevant comment.
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commitdiff
2004-12-15
amwaterhouse
isGap method added to utils
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commitdiff
2004-12-14
amwaterhouse
Hastable is not used anywhere
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commitdiff
2004-12-14
amwaterhouse
Hashtable size must allow for total-start
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commitdiff
2004-12-14
amwaterhouse
Choosing sort again reverses the sort order
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commitdiff
2004-11-18
amwaterhouse
make variable public
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commitdiff
2004-11-16
amwaterhouse
Removed spaces
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commitdiff
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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commitdiff