source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / analysis /

2006-03-01	jprocter	fixed after refactoring of SequenceFeature[] seq.getSeq...	tree \| commitdiff
2006-02-24	amwaterhouse	Features now array	tree \| commitdiff
2005-12-15	amwaterhouse	Prevents confusing extra line being output in Java...	tree \| commitdiff
2005-12-08	jprocter	exception checks for (de)uniquify	tree \| commitdiff
2005-12-08	amwaterhouse	After merge	tree \| commitdiff
2005-12-06	amwaterhouse	hasDistances added	tree \| commitdiff
2005-12-06	amwaterhouse	after merge	tree \| commitdiff
2005-11-18	jprocter	Fixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...	tree \| commitdiff
2005-10-03	amwaterhouse	Remove redundancy from eclipse	tree \| commitdiff
2005-09-30	amwaterhouse	Restore file before eclipse changes	tree \| commitdiff
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	tree \| commitdiff
2005-09-23	amwaterhouse	Capture output as details	tree \| commitdiff
2005-09-08	amwaterhouse	REmove unnecessary imports	tree \| commitdiff
2005-08-23	amwaterhouse	Finalize calculate method	tree \| commitdiff
2005-08-22	jprocter	fixed uniquify seq[]	tree \| commitdiff
2005-08-22	jprocter	comment on WORD_SEP values	tree \| commitdiff
2005-08-18	amwaterhouse	Character methods don't exist in java 1.1	tree \| commitdiff
2005-08-18	jprocter	various case sensitivity bugs fixed in residue comparis...	tree \| commitdiff
2005-08-17	jprocter	Fixed basic name to sequence ID matching (bug dragonfly...	tree \| commitdiff
2005-08-15	amwaterhouse	Declare variables outside loops	tree \| commitdiff
2005-08-15	amwaterhouse	Calculate gap and nogap ratio here	tree \| commitdiff
2005-08-12	jprocter	fixed leafMapping bug for Id's like SequenceX (where...	tree \| commitdiff
2005-06-30	amwaterhouse	Formatting changes	tree \| commitdiff
2005-06-30	amwaterhouse	Not used in Jalview	tree \| commitdiff
2005-06-16	amwaterhouse	Sort Groups modified	tree \| commitdiff
2005-06-10	amwaterhouse	Remove imports	tree \| commitdiff
2005-06-08	amwaterhouse	Formatted source	tree \| commitdiff
2005-06-08	amwaterhouse	GPL license added	tree \| commitdiff
2005-06-03	jprocter	Reinstated 'create tree from selected region only'...	tree \| commitdiff
2005-06-02	jprocter	minor changes to try and make jalopy happy	tree \| commitdiff
2005-05-30	jprocter	Changed sortByPID to use the gapped PID function.	tree \| commitdiff
2005-05-25	jprocter	tidied up system.out messages and moved many to stderr.	tree \| commitdiff
2005-05-24	jprocter	extended the UpdatePlaceholders to check for any new...	tree \| commitdiff
2005-05-24	jprocter	added PropertyChangeListeners for alignviewport.alignme...	tree \| commitdiff
2005-05-24	jprocter	several ordering bug fixes.	tree \| commitdiff
2005-05-23	jprocter	Ugly but improved recovery of sequence names, starts...	tree \| commitdiff
2005-05-22	jprocter	Added alignment ordering option to 'Sort by' and implem...	tree \| commitdiff
2005-05-20	jprocter	Various sort methods added and bugs fixed (coping with...	tree \| commitdiff
2005-05-20	jprocter	added tree node property for sequence placeholders.	tree \| commitdiff
2005-05-19	amwaterhouse	toString () method added	tree \| commitdiff
2005-05-05	jprocter	Moved tree leafname to alignment set matching into...	tree \| commitdiff
2005-05-05	amwaterhouse	moved to jalview.io	tree \| commitdiff
2005-05-03	amwaterhouse	1.1 compatible	tree \| commitdiff
2005-05-03	amwaterhouse	findKmers and fetchSequenceFeatures removed	tree \| commitdiff
2005-04-16	amwaterhouse	AlignPanel RefreshPanels put into paintComponent	tree \| commitdiff
2005-04-13	jprocter	Gap characters are now properly detected in the conserv...	tree \| commitdiff
2005-04-11	jprocter	added the alignment quality calculation from the old...	tree \| commitdiff
2005-04-08	jprocter	remember: do not check in quick bug fixes that you...	tree \| commitdiff
2005-04-08	jprocter	Alignment quality with funky coloured histograms.	tree \| commitdiff
2005-04-07	amwaterhouse	checkfor gap characters	tree \| commitdiff
2005-03-23	amwaterhouse	drawableSequence removed	tree \| commitdiff
2005-03-18	jprocter	New constructors for turning NewickFile objects into...	tree \| commitdiff
2005-03-09	amwaterhouse	dont perform blast search at present	tree \| commitdiff
2005-03-08	jprocter	fixed so that alignment percentage ID is used for dista...	tree \| commitdiff
2005-02-11	amwaterhouse	must add all features even if start and end res are...	tree \| commitdiff
2005-02-11	amwaterhouse	bug fixed if featureEnd is beyond end of sequence	tree \| commitdiff
2005-02-08	amwaterhouse	Looks for missing ids using BlastClient	tree \| commitdiff
2005-02-07	amwaterhouse	Properties bug fixed	tree \| commitdiff
2005-02-07	amwaterhouse	Now displays sequence features	tree \| commitdiff
2005-02-07	amwaterhouse	New class for fetching sequence features	tree \| commitdiff
2005-02-04	amwaterhouse	SequenceFeature display added	tree \| commitdiff
2005-01-12	jprocter	random change 3	tree \| commitdiff
2005-01-12	jprocter	another dummy.	tree \| commitdiff
2005-01-12	jprocter	irrelevant comment.	tree \| commitdiff
2004-12-15	amwaterhouse	isGap method added to utils	tree \| commitdiff
2004-12-14	amwaterhouse	Hastable is not used anywhere	tree \| commitdiff
2004-12-14	amwaterhouse	Hashtable size must allow for total-start	tree \| commitdiff
2004-12-14	amwaterhouse	Choosing sort again reverses the sort order	tree \| commitdiff
2004-11-18	amwaterhouse	make variable public	tree \| commitdiff
2004-11-16	amwaterhouse	Removed spaces	tree \| commitdiff
2004-11-02	amwaterhouse	Jalview Imported Sources start	tree \| commitdiff

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