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JAL-3878 Clear services list on reload.
[jalview.git]
/
src
/
jalview
/
api
/
2021-07-09
Mateusz Warowny
JAL-3690 Remove references to old AlignCalcManager.
bug/JAL-3849_aacon-parameters
tree
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commitdiff
2021-01-27
Mateusz
JAL-3690 Introduce AlignCalcManager2 tests.
feature/JAL-3690_callback-based-web-services
tree
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commitdiff
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
tree
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commitdiff
2020-11-13
Mateusz Waronwy
JAL-3690 separate startup and poll code in SeqAnnotatio...
tree
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commitdiff
2020-11-11
Mateusz Waronwy
JAL-3690 partially reworked AlignCalcManager
tree
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commitdiff
2020-10-26
Mateusz Waronwy
JAL-3690 - introduce shutdown method that cleans up...
tree
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commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Documentation for AlignCalcListener
tree
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commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Catch and notify about worker cancellation...
tree
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commitdiff
2020-10-21
Mateusz Waronwy
JAL-3690 Documentation for AlignCalcManagerI2
tree
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commitdiff
2020-10-21
Mateusz Warowny
JAL - 3690 AlignCalc rebuilt - FutureTask-based manager
tree
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commitdiff
2020-06-07
BobHanson
JAL-3446 reorganized JalviewJSApp (accidentally put...
tree
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commitdiff
2020-06-07
BobHanson
reorganized JalviewJSApp (accidentally put that in...
tree
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commitdiff
2020-06-07
BobHanson
JAL-3446 JavaScript interface
tree
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commitdiff
2020-06-06
BobHanson
JAL-3446 adds Jmol viewer embedding.
tree
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commitdiff
2020-06-06
BobHanson
JAL-3379 JalviewJS-API specs - preliminary
tree
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commitdiff
2020-06-05
BobHanson
JAL-3446 removes all JalviewJSApp dependency from jalvi...
tree
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commitdiff
2020-06-05
BobHanson
Refactoring of Jalview, JalviewAppLoader, JalviewApp...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet Jalview.java
tree
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commitdiff
2020-06-01
BobHanson
JAL-3262 from JAL-3523-applet JalviewApp and JalviewJSApi
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2020-05-18
gmungoc
Merge branch 'Jalview-JS/develop' into develop
tree
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commitdiff
2020-04-23
Jim Procter
Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...
tree
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commitdiff
2020-04-21
Jim Procter
JAL-3407 add GPL license to Jalview source files
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-02-18
Jim Procter
JAl-3187 JAL-3535 JAL-3534 update open feature settings...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature...
tree
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commitdiff
2020-02-17
Jim Procter
JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
tree
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commitdiff
2020-02-14
Jim Procter
JAL-3187 alternative solution - gather feature settings...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 view controller UI api method to show feature...
tree
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commitdiff
2020-02-12
Jim Procter
JAL-3187 convenience method on SplitContainerI to retri...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-09-26
Jim Procter
JAL-3070 JAL-3066 JAL-2808 allow feature filter definit...
tree
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commitdiff
2019-08-13
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-10
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-06-26
Jim Procter
JAL-3330 javadoc
tree
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commitdiff
2019-06-24
Jim Procter
JAL-3330 mergeFeatureStyles - needs test coverage
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2019-06-06
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-05
tva
JAL-3285 add unmerged features to AlignViewportI
tree
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commitdiff
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-2839findWi...
tree
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commitdiff
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3049colour...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
tree
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commitdiff
2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
tree
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commitdiff
2019-01-18
gmungoc
JAL-3187 basic first version for tooltips only (renderi...
tree
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commitdiff
2019-01-17
gmungoc
Merge branch 'develop' into Jalview-BH/JAL-3026-JAL...
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 new method to test if feature fails colour...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 method that tests all conditions for feature...
tree
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commitdiff
2018-07-20
gmungoc
JAL-3048 revised AlignExportSettings dialog with respon...
tree
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commitdiff
2018-07-11
Jim Procter
JAL-3048 refactored export settings to bean+dialog...
Jalview-BH/JAL-3048_exportSettingsrefactor
tree
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commitdiff
2018-07-06
gmungoc
Merge branch 'bug/JAL-3049colourCellTooltip' into Jalvi...
tree
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commitdiff
2018-06-29
gmungoc
JAL-3049 JAL-2069 colour icon tooltip including by...
tree
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commitdiff
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
tree
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commitdiff
2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
bug/JAL-2839findWithHidden
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
tree
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commitdiff
2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
tree
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commitdiff
2018-02-28
gmungoc
JAL-2629 some tidying of Hmmer commands (wip)
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-07
Jim Procter
JAL-2902 - isBusy and hasMapping methods so client...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-16
gmungoc
JAL-2069 removed unused and redundant thresholdIsMinMax
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 add attributeName and noValueColour to Feature...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 feature filters held on FeatureRenderer, getCo...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 reverted to develop (attribute filters removed)
tree
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commitdiff
2017-10-31
gmungoc
JAL-2808 revised util.matcher package, 2 filter conditi...
tree
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commitdiff
2017-10-30
gmungoc
JAL-2808 add attribute filter(s) to FeatureColour
tree
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commitdiff
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