JAL-2446 optimised new method to find feature colour for overview
[jalview.git] / src / jalview / appletgui /
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota...
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence...
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-16 kiramtJAL-2388 Applet update for overview panel
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour
2017-03-15 gmungocJAL-2438 corrected getFeatureRenderer()
2017-03-15 gmungocJAL-2442 applet feature transparency also on overview...
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit...
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui...
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated...
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-27 kiramtJAL-2388 Minor refactoring
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to...
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in...
2017-02-08 gmungocJAL-2405 set context on selection group for tailored...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2385 tweak to applet 'switch colour slider context'
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2385 update slider settings when switching slider...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocJAL-2383 fixup from last merge
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-20 gmungocJAL-2383 check for null, spelling
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 kiramtJAL-2316 Prevent applet from loading null links into...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2374 fix popup out by one and multiple groups bugs
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-15 kiramtJAL-2316 Changes following review.
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee...
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages
2016-12-05 kiramtJAL-2316 Added UrlProvider factories. Tidied up labelling.
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6...
2016-11-22 gmungocJAL-1919 JAL-2177 handle empty pdbentries list correctly features/JAL-2177_update_jmol_to_14.6.4_2016.10.26
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-15 kiramtJAL-2316 Moved url providers into own package
2016-11-15 kiramtJAL-2316 Refactoring of functionality to provide urls...
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code...
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 kiramtJAL-2282 Refactor applet too
2016-11-02 Jim ProcterJAL-966 JAL-345 JAL-1738 quick rewrite of scrollToPosit...
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases...
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR...
2016-10-31 kiramtForce double-clicking to use sequence_id cases and...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
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