2012-06-15 |
jprocter | JAL-535 refactored core code from PCA viewer to viewmodel. |
tree | commitdiff |
2012-06-15 |
jprocter | Merge branch 'JAL-1013_pca_rna_dna' into develop |
tree | commitdiff |
2012-06-13 |
jprocter | javatidy |
tree | commitdiff |
2012-06-12 |
jprocter | JAL-1115 refactor reordering code operating directly... |
tree | commitdiff |
2012-06-12 |
jprocter | JAL-1115 refactor base collection for Alignment from... |
tree | commitdiff |
2012-06-07 |
jprocter | javatidy |
tree | commitdiff |
2012-06-07 |
jprocter | JAL-967, JAL-1114, JAL-1115 - modified render and calcu... |
tree | commitdiff |
2012-05-31 |
jprocter | formatting |
tree | commitdiff |
2012-05-30 |
jprocter | JAL-969 - refactor colourscheme machinery from GUI... |
tree | commitdiff |
2012-05-30 |
jprocter | JAL-1114 - refactor methods handling Vectors and Hashta... |
tree | commitdiff |
2012-05-24 |
jprocter | patch for occasional NPE when applet is quit |
tree | commitdiff |
2012-05-23 |
jprocter | JAL-1078 - extend applet cut'n'paste features/annotatio... |
tree | commitdiff |
2012-05-23 |
jprocter | JAL-1067, JAL-1105 - refactor parser to fit Jalview... |
tree | commitdiff |
2012-05-23 |
jprocter | JAL-1102 todos and status updates when data is added |
tree | commitdiff |
2012-05-23 |
jprocter | todo JAL-1104 : functions to refactor |
tree | commitdiff |
2012-05-22 |
jprocter | Merge remote-tracking branch 'origin/Tcoffee_JAL-1065... |
tree | commitdiff |
2012-05-16 |
jprocter | warning dialog - fixes JAL-1099 |
tree | commitdiff |
2011-12-08 |
jprocter | (JAL-1013) specify sequence type to ensure PCA calculat... |
tree | commitdiff |
2011-12-08 |
jprocter | reorder fields to match application |
tree | commitdiff |
2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into develop |
tree | commitdiff |
2011-11-04 |
jprocter | (JAL-980,JAL-982) - applet console only allows console... |
tree | commitdiff |
2011-11-04 |
jprocter | (JAL-980) update binding for refactored Jmol constants... |
tree | commitdiff |
2011-10-28 |
jprocter | (JAL-885) RNA helix and purine pyrimidine colouring... |
tree | commitdiff |
2011-10-28 |
jprocter | JAL-969 - refactor initialisation of automatic annotati... |
tree | commitdiff |
2011-10-28 |
jprocter | JAL-902 structure conservation row for applet |
tree | commitdiff |
2011-10-28 |
jprocter | (JAL-970) interactive editing of RNA helix annotation... |
tree | commitdiff |
2011-10-28 |
jprocter | (JAL-889) ensure annotation row is revalidated after... |
tree | commitdiff |
2011-10-27 |
jprocter | (JAL-969) efficiency |
tree | commitdiff |
2011-10-27 |
jprocter | (JAL-969) removed TODOs |
tree | commitdiff |
2011-10-27 |
jprocter | (JAL-969) refactored alignmentViewport base class to... |
tree | commitdiff |
2011-10-27 |
jprocter | (JAL-967) ensure annotation panel is rendered with... |
tree | commitdiff |
2011-10-21 |
jprocter | Refactored alignment viewport to use common base, exten... |
tree | commitdiff |
2011-10-21 |
jprocter | extend alignPanel api with OOMHandler call to raise... |
tree | commitdiff |
2011-10-21 |
jprocter | Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into... |
tree | commitdiff |
2011-10-21 |
jprocter | (JAL-965) new api methods to allow features to be loade... |
tree | commitdiff |
2011-10-21 |
jprocter | (JAL-962) allow group visibility to be specified before... |
tree | commitdiff |
2011-10-14 |
jprocter | (JAL-958) - normalised sequence logo for applet |
tree | commitdiff |
2011-10-10 |
jprocter | update author list in license for (JAL-826) |
tree | commitdiff |
2011-10-04 |
jprocter | Merge remote-tracking branch 'remotes/origin/2_5_1_rna_... |
tree | commitdiff |
2011-09-27 |
jprocter | backout overzealous logic disabling feature links in... |
tree | commitdiff |
2011-09-27 |
jprocter | NPE fix |
tree | commitdiff |
2011-09-27 |
jprocter | apply version 2.7 copyright |
tree | commitdiff |
2011-09-16 |
jprocter | JAL-468 JAL-936 sort alignment by tree and autosort... |
tree | commitdiff |
2011-09-14 |
jprocter | JAL-234 - default button to reset min/max colours and... |
tree | commitdiff |
2011-08-30 |
jprocter | patch for JAL-731 |
tree | commitdiff |
2011-08-30 |
jprocter | patch for JAL-729 - NPE avoided and cut and paste impor... |
tree | commitdiff |
2011-08-30 |
jprocter | JAL-915 - ensured that exceptions are not raised in... |
tree | commitdiff |
2011-08-19 |
jprocter | JAL-908,JAL-701 - patch applet to strip HTML tags from... |
tree | commitdiff |
2011-08-15 |
jprocter | JAL-750 - automaticScrolling=true by default. Refactore... |
tree | commitdiff |
2011-08-15 |
jprocter | JAL-904 added scrollToRow and scrollToColumn methods... |
tree | commitdiff |
2011-07-28 |
jprocter | added 'since 2.x notes to parameters'. User configurabl... |
tree | commitdiff |
2011-07-25 |
janengelhardt | 'Fix Group Colour bug' merge; JAL-580 |
tree | commitdiff |
2011-07-25 |
janengelhardt | Start merging of Laurens Code |
tree | commitdiff |
2011-07-22 |
jprocter | ensure propagation of colour change on annotation updat... |
tree | commitdiff |
2011-07-22 |
jprocter | fix NPE when annotation colourgradient is applied |
tree | commitdiff |
2011-07-22 |
jprocter | default parameter for colours in annotation shading... |
tree | commitdiff |
2011-07-18 |
jprocter | fixed mouseover problem - still need to deal with flick... |
tree | commitdiff |
2011-07-05 |
jprocter | Revert "partial patch for JAL-411 - text rendered above... |
tree | commitdiff |
2011-07-05 |
jprocter | partial patch for JAL-411 - text rendered above features |
tree | commitdiff |
2011-07-05 |
jprocter | Revert "Revert "needed for linkedapplets_ng.html (JAL... |
tree | commitdiff |
2011-07-05 |
jprocter | Revert "needed for linkedapplets_ng.html (JAL-859,JAL... |
tree | commitdiff |
2011-07-05 |
jprocter | needed for linkedapplets_ng.html (JAL-859,JAL-469) |
tree | commitdiff |
2011-07-05 |
jprocter | whole frame should be validated. |
tree | commitdiff |
2011-06-30 |
jprocter | set initial annotation panel height appropriately ... |
tree | commitdiff |
2011-06-29 |
jprocter | repaint image buffer height change (JAL-564) and ensure... |
tree | commitdiff |
2011-06-29 |
jprocter | repaint image buffer resize when panel height changes... |
tree | commitdiff |
2011-06-29 |
jprocter | preliminary patch to reduce problem observed in JAL-546 |
tree | commitdiff |
2011-06-29 |
jprocter | ensure annotation height adjuster doesn't disappear... |
tree | commitdiff |
2011-05-17 |
jprocter | refactor to allow distinct StructureSelectionManager... |
tree | commitdiff |
2011-05-05 |
jprocter | javadoc and informative error message when external... |
tree | commitdiff |
2011-04-25 |
jprocter | JAL-824 - ensure Jmol colouring is a radio button |
tree | commitdiff |
2011-04-22 |
jprocter | option for enabling Jmol colouring mode JAL-824 |
tree | commitdiff |
2011-04-21 |
jprocter | moved to same place as in jalview.gui |
tree | commitdiff |
2011-02-27 |
jprocter | patch for occasional ArrayIndexOutOfBounds |
tree | commitdiff |
2011-02-27 |
jprocter | patch for JAL-792 |
tree | commitdiff |
2011-02-25 |
jprocter | first approximation for JAL-782 - hint that opaque... |
tree | commitdiff |
2011-02-18 |
jprocter | fix scrolltoposition behaviour and new alignmentPanel api |
tree | commitdiff |
2011-02-18 |
jprocter | fix scrolltoposition behaviour |
tree | commitdiff |
2011-02-18 |
jprocter | call to release any explicit event handler references |
tree | commitdiff |
2011-02-14 |
jprocter | JAL-769 |
tree | commitdiff |
2011-02-14 |
jprocter | JAL-564 (annotation panel height adjustment) and alignm... |
tree | commitdiff |
2011-02-14 |
jprocter | JAL-621 (mouseover debugging) and JAL-564 (annotation... |
tree | commitdiff |
2011-02-14 |
jprocter | JAL-621 and JAL-564 |
tree | commitdiff |
2011-02-14 |
jprocter | JAL-621 - also renamed list of javascript handlers |
tree | commitdiff |
2011-02-14 |
jprocter | refactored annotation panel height calculation |
tree | commitdiff |
2011-02-04 |
jprocter | 1.2ish awt methods |
tree | commitdiff |
2011-02-04 |
jprocter | 1.2ish awt methods and excluding unused code |
tree | commitdiff |
2011-02-04 |
jprocter | don't need to retrieve idwidthadjuster |
tree | commitdiff |
2011-02-04 |
jprocter | patch for JAL-760 |
tree | commitdiff |
2011-02-04 |
jprocter | group associated annotation and logos JAL-516 JAL-759 |
tree | commitdiff |
2011-02-04 |
jprocter | adjustable annotation panel height and vertical scrollb... |
tree | commitdiff |
2011-01-21 |
jprocter | search result highlighting and scrolling and some patch... |
tree | commitdiff |
2011-01-21 |
jprocter | more efficient highlighting and selection display JAL-469 |
tree | commitdiff |
2011-01-21 |
jprocter | relaxed ID matching parameter JAL-753 and sortBy JAL-754 |
tree | commitdiff |
2011-01-18 |
jprocter | patch for JAL-695 - need to test if this is observed... |
tree | commitdiff |
2011-01-18 |
jprocter | refactored VamsasListener to allow the source of the... |
tree | commitdiff |
2011-01-17 |
jprocter | use local reference for current target frame as set... |
tree | commitdiff |
2011-01-17 |
jprocter | JAL-750 and JAL-451 |
tree | commitdiff |
2011-01-12 |
jprocter | 1.1 compat |
tree | commitdiff |
2011-01-12 |
jprocter | javascript callback for selection, mousover, and functi... |
tree | commitdiff |
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