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JAL-1397 store colour by sequence and originalColour flags for AnnotationColourScheme
[jalview.git] / src / jalview / appletgui /
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag tree | commitdiff
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... tree | commitdiff
2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu tree | commitdiff
2013-10-08 Jim Procterfix for JAL-1387 tree | commitdiff
2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for... tree | commitdiff
2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl... tree | commitdiff
2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController tree | commitdiff
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings... tree | commitdiff
2013-08-29 darolmari18n tree | commitdiff
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs... tree | commitdiff
2013-06-23 Jim ProcterJAL-1230 update alignment state for annotation edits... tree | commitdiff
2013-06-07 Jim Procterfix for JAL-1246 tree | commitdiff
2013-06-07 Jim ProcterJAL-1307 patch to squash number format exceptions when... tree | commitdiff
2013-05-24 Jim ProcterJAL-1161 conditional parameters for controlling clipping tree | commitdiff
2013-05-24 Jim ProcterJAL-1161 changed signature to allow clipping bounds... tree | commitdiff
2013-01-18 jprocterJAL-1255 don't show 'Right click to add annotations... tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to... tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-09-25 jprocterJAL-1031 allow empty selections to pass through to... tree | commitdiff
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty... tree | commitdiff
2012-09-24 jprocterJAL-958 revised applet parameter documentation to stand... tree | commitdiff
2012-09-24 jprocterJAL-958 normalise logo menu options in applet tree | commitdiff
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme... tree | commitdiff
2012-09-24 jprocteronly recalc group conservation after last sequence... tree | commitdiff
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme... tree | commitdiff
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated... tree | commitdiff
2012-09-19 jprocterJAL-1170 column and row positions confused in implement... tree | commitdiff
2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation... tree | commitdiff
2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug tree | commitdiff
2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible... tree | commitdiff
2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graph... tree | commitdiff
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed tree | commitdiff
2012-06-15 jprocterfix JAL-1122 tree | commitdiff
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel tree | commitdiff
2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel. tree | commitdiff
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop tree | commitdiff
2012-06-13 jprocterjavatidy tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly... tree | commitdiff
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... tree | commitdiff
2012-06-07 jprocterjavatidy tree | commitdiff
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 - modified render and calcu... tree | commitdiff
2012-05-31 jprocterformatting tree | commitdiff
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI... tree | commitdiff
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... tree | commitdiff
2012-05-24 jprocterpatch for occasional NPE when applet is quit tree | commitdiff
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio... tree | commitdiff
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview... tree | commitdiff
2012-05-23 jprocterJAL-1102 todos and status updates when data is added tree | commitdiff
2012-05-23 jproctertodo JAL-1104 : functions to refactor tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2012-05-16 jprocterwarning dialog - fixes JAL-1099 tree | commitdiff
2011-12-08 jprocter(JAL-1013) specify sequence type to ensure PCA calculat... tree | commitdiff
2011-12-08 jprocterreorder fields to match application tree | commitdiff
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop tree | commitdiff
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console... tree | commitdiff
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants... tree | commitdiff
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring... tree | commitdiff
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati... tree | commitdiff
2011-10-28 jprocterJAL-902 structure conservation row for applet tree | commitdiff
2011-10-28 jprocter(JAL-970) interactive editing of RNA helix annotation... tree | commitdiff
2011-10-28 jprocter(JAL-889) ensure annotation row is revalidated after... tree | commitdiff
2011-10-27 jprocter(JAL-969) efficiency tree | commitdiff
2011-10-27 jprocter(JAL-969) removed TODOs tree | commitdiff
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... tree | commitdiff
2011-10-27 jprocter(JAL-967) ensure annotation panel is rendered with... tree | commitdiff
2011-10-21 jprocterRefactored alignment viewport to use common base, exten... tree | commitdiff
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise... tree | commitdiff
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... tree | commitdiff
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... tree | commitdiff
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before... tree | commitdiff
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterbackout overzealous logic disabling feature links in... tree | commitdiff
2011-09-27 jprocterNPE fix tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort... tree | commitdiff
2011-09-14 jprocterJAL-234 - default button to reset min/max colours and... tree | commitdiff
2011-08-30 jprocterpatch for JAL-731 tree | commitdiff
2011-08-30 jprocterpatch for JAL-729 - NPE avoided and cut and paste impor... tree | commitdiff
2011-08-30 jprocterJAL-915 - ensured that exceptions are not raised in... tree | commitdiff
2011-08-19 jprocterJAL-908,JAL-701 - patch applet to strip HTML tags from... tree | commitdiff
2011-08-15 jprocterJAL-750 - automaticScrolling=true by default. Refactore... tree | commitdiff
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods... tree | commitdiff
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl... tree | commitdiff
2011-07-25 janengelhardt'Fix Group Colour bug' merge; JAL-580 tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2011-07-22 jprocterensure propagation of colour change on annotation updat... tree | commitdiff
2011-07-22 jprocterfix NPE when annotation colourgradient is applied tree | commitdiff
2011-07-22 jprocterdefault parameter for colours in annotation shading... tree | commitdiff
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick... tree | commitdiff
2011-07-05 jprocterRevert "partial patch for JAL-411 - text rendered above... tree | commitdiff
2011-07-05 jprocterpartial patch for JAL-411 - text rendered above features tree | commitdiff
2011-07-05 jprocterRevert "Revert "needed for linkedapplets_ng.html (JAL... tree | commitdiff
2011-07-05 jprocterRevert "needed for linkedapplets_ng.html (JAL-859,JAL... tree | commitdiff
2011-07-05 jprocterneeded for linkedapplets_ng.html (JAL-859,JAL-469) tree | commitdiff
2011-07-05 jprocterwhole frame should be validated. tree | commitdiff
2011-06-30 jprocterset initial annotation panel height appropriately ... tree | commitdiff
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