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[jalview.git]
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src
/
jalview
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bin
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2006-07-07
amwaterhouse
Colour argument added, to mirror applet view
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commitdiff
2006-06-22
amwaterhouse
ParseFeaturesFile takes protocol as arg
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commitdiff
2006-06-09
amwaterhouse
readAnnotationFile
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commitdiff
2006-06-09
amwaterhouse
parseFeaturesFile
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commitdiff
2006-06-07
amwaterhouse
Parameter to show feature settings
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commitdiff
2006-05-17
jprocter
added the jnetfile parameter to specify a JNet concise...
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commitdiff
2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
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commitdiff
2006-05-10
amwaterhouse
remove import
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commitdiff
2006-05-01
amwaterhouse
Forces init of alignPanel if annotations added
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commitdiff
2006-04-07
amwaterhouse
ModellerOutput set in preferences
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commitdiff
2006-04-04
amwaterhouse
Add annoations from the command line
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commitdiff
2006-04-04
amwaterhouse
Jalview2XML does not use static load
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commitdiff
2006-03-16
amwaterhouse
Allow loading from Zip files
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commitdiff
2006-03-08
amwaterhouse
IdentifyFile should not be static
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commitdiff
2006-02-08
amwaterhouse
FormatAdapter throws exception
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commitdiff
2006-02-03
amwaterhouse
Reads annotation files
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commitdiff
2006-01-12
jprocter
ensured properties are loaded before loggers are initia...
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commitdiff
2005-12-22
amwaterhouse
Allow embedded applet
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commitdiff
2005-12-15
amwaterhouse
SetMenuBar(null) when closing frames. Prevents a bug...
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commitdiff
2005-12-12
amwaterhouse
GetAlignment uses active alignment window
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commitdiff
2005-12-09
amwaterhouse
Only load the tree file once, for first alignment
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commitdiff
2005-12-06
amwaterhouse
after merge
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commitdiff
2005-10-07
amwaterhouse
Don't exit if file not found and not headless
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commitdiff
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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commitdiff
2005-09-28
amwaterhouse
Applet frame name
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commitdiff
2005-09-28
amwaterhouse
Set frame size each applet
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commitdiff
2005-09-28
amwaterhouse
Remove latestVersion if null
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commitdiff
2005-09-28
amwaterhouse
Remove latestVersion if null
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commitdiff
2005-09-28
amwaterhouse
New params
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commitdiff
2005-09-22
amwaterhouse
Create instance of FormatAdapter
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commitdiff
2005-09-15
amwaterhouse
Applet has main method, excutable
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commitdiff
2005-09-15
amwaterhouse
Logger moved to prefs so that class not found error...
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commitdiff
2005-08-19
amwaterhouse
System.out if error setting properties
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commitdiff
2005-08-17
jprocter
<No Comment Entered>
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commitdiff
2005-08-17
amwaterhouse
Use getDefault for exampleFile
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commitdiff
2005-08-17
amwaterhouse
Discover user colours
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commitdiff
2005-08-15
amwaterhouse
Jalview Version:
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commitdiff
2005-08-15
amwaterhouse
Output java version, os version on startup
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commitdiff
2005-08-09
amwaterhouse
Can give a name to new browser window
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commitdiff
2005-08-09
amwaterhouse
Properties file is used in preference to viewport/cache...
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commitdiff
2005-08-03
amwaterhouse
Can run headless=true
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2005-07-11
amwaterhouse
Version changes
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commitdiff
2005-07-11
amwaterhouse
Add test case if code version not found
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commitdiff
2005-07-11
amwaterhouse
Release and build date methods changed
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commitdiff
2005-07-07
amwaterhouse
Runs if no files to open and -nodisplay is not used
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-14
amwaterhouse
Set background colour of applet RGB
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commitdiff
2005-06-10
jprocter
added logs.Castor.level
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commitdiff
2005-06-10
jprocter
added castor logger configuration.
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-06-02
amwaterhouse
Check startup file is not null
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commitdiff
2005-05-25
jprocter
added jalview.browser property so a linux user can...
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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commitdiff
2005-05-24
amwaterhouse
URL getresource adds %20 for spaces. Use user.dir instead
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2005-05-20
amwaterhouse
look for startup file
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commitdiff
2005-05-19
amwaterhouse
release version
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commitdiff
2005-05-04
amwaterhouse
Applet files
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commitdiff
2005-04-29
amwaterhouse
read in preferences at start up
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commitdiff
2005-04-25
amwaterhouse
if applet, load properties in void init
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commitdiff
2005-04-21
amwaterhouse
Allow for -open arg
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commitdiff
2005-04-07
amwaterhouse
remove setdecorated line
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commitdiff
2005-04-01
amwaterhouse
Build date determination
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commitdiff
2005-03-31
jprocter
added a an axis log4j appender property to the jalview...
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commitdiff
2005-03-30
jprocter
fixed the log4j messages.
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commitdiff
2005-03-21
amwaterhouse
use system l&f
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commitdiff
2005-03-17
amwaterhouse
checks for last update
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commitdiff
2005-03-15
amwaterhouse
stick with cross platform look and feel!!!
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commitdiff
2005-03-15
amwaterhouse
try system look and feel for a change
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commitdiff
2005-03-10
amwaterhouse
fonts added to properties
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commitdiff
2005-02-21
amwaterhouse
note of user_defined_colours added
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commitdiff
2005-02-08
amwaterhouse
Set property returns key
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commitdiff
2005-02-07
amwaterhouse
load properties on startup
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commitdiff
2005-02-07
amwaterhouse
Properties added
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2005-01-25
amwaterhouse
system.exit or destroy if applet or app
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commitdiff
2005-01-25
amwaterhouse
extends Applet
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commitdiff
2004-12-10
amwaterhouse
Use cross platform lookandfeel
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commitdiff
2004-11-16
amwaterhouse
don't use setdefaultlookandfeeldecorated, its buggy
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commitdiff
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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