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Merge branch 'develop' into trialMerge
[jalview.git] / src / jalview / bin /
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... tree | commitdiff
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... tree | commitdiff
2019-03-06 gmungocJAL-3035 more das bits removed tree | commitdiff
2019-03-06 Jim ProcterJAL-3208 re-enable the setprop CLI arg, but only in... tree | commitdiff
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... tree | commitdiff
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB tree | commitdiff
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main... tree | commitdiff
2019-02-25 gmungocJAL-3032 JalviewJS2 converts url query parameters to... tree | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... tree | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... tree | commitdiff
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; tree | commitdiff
2019-01-11 hansonr(commented out but potentially useful) methods to tap... tree | commitdiff
2018-12-01 hansonradding jaxbtest.jvx and directing JalviewJS2.java to... tree | commitdiff
2018-11-11 hansonradds static declaration of AJAX-readable domains tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings tree | commitdiff
2018-08-21 hansonrmc_view references were MCview tree | commitdiff
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for... tree | commitdiff
2018-07-23 gmungocJAL-3048 javadoc and code tidy tree | commitdiff
2018-07-20 hansonrJAL-3032 moving Mungo's original JalviewJS.java out... tree | commitdiff
2018-07-17 bsoaresJAL-3065 tree | commitdiff
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor tree | commitdiff
2018-06-27 hansonrJAL-3032 just the changes pulled already tree | commitdiff
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... tree | commitdiff
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! tree | commitdiff
2018-06-24 hansonrJAL-3032 tree | commitdiff
2018-06-23 hansonrRELATIVE_URL tree | commitdiff
2018-06-23 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source... tree | commitdiff
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... tree | commitdiff
2018-06-22 gmungocMerge branch 'Jalview-BH/JAL-3026' of https://source... tree | commitdiff
2018-06-22 gmungocJAL-3030 size split frame taller tree | commitdiff
2018-06-22 hansonrfix for no access-control-origin on jalview site tree | commitdiff
2018-06-21 gmungocJAL-3030 allow uncaught exceptions (for easier JS debuggin) tree | commitdiff
2018-06-21 gmungocJAL-3030 try to open a split frame if file and file2... tree | commitdiff
2018-06-20 hansonrupdate of javajs package; adds org.apache.harmony,... tree | commitdiff
2018-06-20 hansonrBob first commit JAL-3032 tree | commitdiff
2018-06-20 gmungocJAL-3030 suppress change that goes with JAL-3031 tree | commitdiff
2018-06-20 gmungocJAL-3030 reads features file, properties file tree | commitdiff
2018-06-19 gmungocJAL-3030 added menu bar tree | commitdiff
2018-06-19 gmungocJAL-3030 first cut of JalviewJS.main entry point accept... tree | commitdiff
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... tree | commitdiff
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... tree | commitdiff
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH) tree | commitdiff
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width... tree | commitdiff
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104 tree | commitdiff
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... tree | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services... tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... tree | commitdiff
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes tree | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop tree | commitdiff
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 tree | commitdiff
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes... tree | commitdiff
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile... tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to... tree | commitdiff
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for... tree | commitdiff
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit tree | commitdiff
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... tree | commitdiff
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled PDB file parser configuratio... tree | commitdiff
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB... tree | commitdiff
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser... tree | commitdiff
2016-09-08 tcofoegbuJAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-22 gmungocJAL-1448 corrected for backwards compatibility for... tree | commitdiff
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected() tree | commitdiff
2016-08-08 gmungocJAL-2168 document '-nonews' parameter tree | commitdiff
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied tree | commitdiff
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