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JAL-3878 Move array index search to ArrayUtils
[jalview.git]
/
src
/
jalview
/
bin
/
2018-12-01
hansonr
adding jaxbtest.jvx and directing JalviewJS2.java to...
tree
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commitdiff
2018-11-11
hansonr
adds static declaration of AJAX-readable domains
tree
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commitdiff
2018-10-19
Ben Soares
JAL-3141 Backup files being created with default suffix...
tree
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-05
Jim Procter
JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7...
bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
tree
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commitdiff
2018-08-21
hansonr
mc_view references were MCview
tree
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commitdiff
2018-07-23
gmungoc
JAL-3056 suppress menu options, and repoint Help, for...
tree
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commitdiff
2018-07-23
gmungoc
JAL-3048 javadoc and code tidy
tree
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commitdiff
2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
tree
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commitdiff
2018-07-20
hansonr
JAL-3032 moving Mungo's original JalviewJS.java out...
tree
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commitdiff
2018-07-17
bsoares
JAL-3065
tree
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commitdiff
2018-07-11
Jim Procter
JAL-3048 refactored export settings to bean+dialog...
Jalview-BH/JAL-3048_exportSettingsrefactor
tree
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commitdiff
2018-06-27
hansonr
JAL-3032 just the changes pulled already
tree
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commitdiff
2018-06-26
Jim Procter
Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-24
hansonr
JAL-3032
tree
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commitdiff
2018-06-23
hansonr
RELATIVE_URL
tree
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commitdiff
2018-06-23
hansonr
Merge branch 'Jalview-BH/JAL-3026' of https://source...
tree
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commitdiff
2018-06-23
hansonr
JAL-3026 JDesktop/JInternalFrames support + relative...
tree
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commitdiff
2018-06-22
gmungoc
Merge branch 'Jalview-BH/JAL-3026' of https://source...
tree
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commitdiff
2018-06-22
gmungoc
JAL-3030 size split frame taller
tree
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commitdiff
2018-06-22
hansonr
fix for no access-control-origin on jalview site
tree
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commitdiff
2018-06-21
gmungoc
JAL-3030 allow uncaught exceptions (for easier JS debuggin)
tree
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commitdiff
2018-06-21
gmungoc
JAL-3030 try to open a split frame if file and file2...
tree
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commitdiff
2018-06-20
hansonr
update of javajs package; adds org.apache.harmony,...
tree
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commitdiff
2018-06-20
hansonr
Bob first commit JAL-3032
tree
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commitdiff
2018-06-20
gmungoc
JAL-3030 suppress change that goes with JAL-3031
tree
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commitdiff
2018-06-20
gmungoc
JAL-3030 reads features file, properties file
tree
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commitdiff
2018-06-19
gmungoc
JAL-3030 added menu bar
tree
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commitdiff
2018-06-19
gmungoc
JAL-3030 first cut of JalviewJS.main entry point accept...
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-09
gmungoc
JAL-2714 HMMSearch cutoff by E-Value, Score or None
tree
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commitdiff
2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
tree
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commitdiff
2018-03-23
gmungoc
JAL-2937 unused field removed
tree
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commitdiff
2018-03-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
tree
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commitdiff
2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
tree
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
tree
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commitdiff
2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-09
TZVanaalten
JAL-2629 removed unnecessary exception throws from...
tree
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commitdiff
2017-08-08
TZVanaalten
JAL-2629 add ability to select hmmer binaries folder
tree
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commitdiff
2017-08-07
TZVanaalten
JAL-2629 current hmmer commands are now executed in...
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-24
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-03-24
Jim Procter
JAL-2360 fix applet build by separating castor XML...
tree
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commitdiff
2017-02-27
gmungoc
JAL-1632 similarity options on TreeChooser panel affect...
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-08
Jim Procter
JAL-2366 updated default URL to jalview.org/services...
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-26
kiramt
JAL-2316 Updated to use identifiers jalview service
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
tree
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commitdiff
2017-01-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2016-12-23
gmungoc
JAL-2360 removed UserDefinedColours.userColourSchemes
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-14
Jim Procter
Merge branch 'patch/JAL-2197_jpredforjnets' into develop
tree
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commitdiff
2016-12-13
kiramt
Merge branch 'develop' into features/JAL-2316
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
tree
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commitdiff
2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
tree
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commitdiff
2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
tree
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commitdiff
2016-10-26
tcofoegbu
JAL-2284 basic support for exporting BioJS MSA viewer...
features/JAL-2284_export-biojsmsa-via-cli
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2197 add jpredfile as alternative form of jnetfile...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 revert to using SequenceOntologyLite due to...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 configure full SO for desktop, SOLite for...
tree
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commitdiff
2016-09-23
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-23
tcofoegbu
JAL-2164 JAL-1919 fixed failed revert commit
tree
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commitdiff
2016-09-19
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled PDB file parser configuratio...
tree
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commitdiff
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
tree
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commitdiff
2016-09-08
tcofoegbu
JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-22
gmungoc
JAL-1448 corrected for backwards compatibility for...
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-08
gmungoc
JAL-2168 document '-nonews' parameter
tree
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commitdiff
2016-08-05
gmungoc
JAL-2168 skip news feed if parameter "-nonews" is supplied
tree
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commitdiff
2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
tree
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commitdiff
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
tree
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commitdiff
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