Merge branch 'merge/JAL-3609_and_JAL-3608' into releases/Release_2_11_1_Branch
[jalview.git] / src / jalview / bin /
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_...
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used.
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick
2020-06-16 Ben SoaresJAL-3608 formatting save only
2020-06-16 Ben SoaresJAL-3608 formatting save only
2020-05-22 soaresJAL-3609 corrected maxdimension to mindimension. Adjust...
2020-05-20 Ben SoaresJAL-3609 removed debugging prints
2020-05-19 Ben SoaresJAL-3609 changed property names to something more palat...
2020-05-19 Ben SoaresJAL-3609 system properties to force a scale, or automat...
2020-05-19 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly...
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console
2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_r...
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown...
2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into...
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax...
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to...
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen...
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version...
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling...
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and...
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,...
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque...
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad...
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log...
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from...
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no...
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS...
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template...
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates...
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building...
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when...
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and...
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat...
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
2019-03-06 gmungocJAL-3035 more das bits removed
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem...
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-09-18 Jim ProcterJAL-3035 more dedasification
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings
2018-07-17 bsoaresJAL-3065
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented...
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work...
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML...
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to...
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for...
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
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