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JAL-1483 cut and paste from SW score model to allow scores based on sequences to...
[jalview.git] / src / jalview / bin /
2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for readin... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-08-30 darolmari18n date/time handling tree | commitdiff
2013-08-29 darolmari18n tree | commitdiff
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs... tree | commitdiff
2013-06-13 Jim ProcterJAL-1314 allow 'nogui' and 'headless' as synonyms for... tree | commitdiff
2013-05-13 Jim ProcterJAL-1289 call oninit callback even if no alignment... tree | commitdiff
2012-11-08 jproctertidy imports tree | commitdiff
2012-10-22 jprocterJalview 2.8 Source Header tree | commitdiff
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch tree | commitdiff
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$... tree | commitdiff
2012-10-03 jprocterformatting tree | commitdiff
2012-10-03 jprocterJAL-1026 - insert a sensible default for proxy so Jalvi... tree | commitdiff
2012-10-01 jprocterJAL-1183 showNews adds news discovery and display threa... tree | commitdiff
2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt tree | commitdiff
2012-08-24 jprocterJAL-1087 skip processing any of the other command line... tree | commitdiff
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio... tree | commitdiff
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview... tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2012-03-30 jprocterMerge branch 'JAL-972-dasobert-to-jdas' into JAL-972... tree | commitdiff
2012-02-29 jprocterJAL-972 - refactored local source builder to registry... tree | commitdiff
2012-02-13 jprocterremove dead imports tree | commitdiff
2012-02-13 jprocterremoved all dasobert code and begun to replace with... tree | commitdiff
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into develop tree | commitdiff
2011-11-09 jprocter(JAL-985,JAL-986) preferences documentation tree | commitdiff
2011-11-09 jprocter(JAL-986) getter for integer user preference properties tree | commitdiff
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change... tree | commitdiff
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... tree | commitdiff
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... tree | commitdiff
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... tree | commitdiff
2011-10-11 jprocternormalised logo rendering (JAL-958) tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943) tree | commitdiff
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic... tree | commitdiff
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc... tree | commitdiff
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state... tree | commitdiff
2011-08-17 jprocterJAL-898 - ensure we only remove a clargs progress bar... tree | commitdiff
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods... tree | commitdiff
2011-08-05 jprocterfetch groovy script from URL (JAL-899) and show progres... tree | commitdiff
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... tree | commitdiff
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... tree | commitdiff
2011-07-28 jprocterrefer to local default setting for proxy when connecting to tree | commitdiff
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl... tree | commitdiff
2011-07-25 jprocteruse proper encoding for storing colour as user preferen... tree | commitdiff
2011-07-22 jprocterdefault parameter for colours in annotation shading... tree | commitdiff
2011-07-22 jproctermethod to get a user default colour (JAL-234) tree | commitdiff
2011-07-03 jprocterextracted jalviewlite API calls as separate interface... tree | commitdiff
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... tree | commitdiff
2011-05-05 jprocterimproved javascript callback execution thread and provi... tree | commitdiff
2011-04-08 jprocterimported properties via -props should never be overwritten tree | commitdiff
2011-04-08 jprocterallow groovy scripts to be run when in headless mode... tree | commitdiff
2011-04-07 jprocterallow groovy scripts to be run when in headless mode... tree | commitdiff
2011-04-07 jprocterallow groovy scripts to be run when in headless mode... tree | commitdiff
2011-02-14 jprocterJAL-621 - also renamed list of javascript handlers tree | commitdiff
2011-02-04 jprocterBalascz reported problems - jalview tries to write... tree | commitdiff
2011-02-04 jprocterJAL-761 tree | commitdiff
2011-01-21 jprocterextended mouseover message with absolute sequence posit... tree | commitdiff
2011-01-18 jprocterremoved securityException caused by accessing class... tree | commitdiff
2011-01-18 jprocterrefactored VamsasListener to allow the source of the... tree | commitdiff
2011-01-17 jprocteradditional test - koders.com/java/fid4C9593FE80CE8AA811... tree | commitdiff
2011-01-17 jprocterwarn user that no JS callbacks will work by default... tree | commitdiff
2011-01-17 jprocterrevised default separator string expression to avoid... tree | commitdiff
2011-01-12 jprocterhandlers with no specified alignframe broadcast events... tree | commitdiff
2011-01-12 jprocter1.1 compat tree | commitdiff
2011-01-12 jprocterjavascript callback for selection, mousover, and functi... tree | commitdiff
2011-01-07 jprocterrefactored dropFile allowing known information to be... tree | commitdiff
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse... tree | commitdiff
2010-11-14 jprocterrefactored protocol check to jalview.io.FileParse tree | commitdiff
2010-11-04 jproctermade ws warning dialog optional, and fixed its wording... tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-09-07 jprocterfix for JAL-631 tree | commitdiff
2010-09-02 jprocter1.1 compatibility tree | commitdiff
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin... tree | commitdiff
2010-08-31 jprocternotes re JAL-629 tree | commitdiff
2010-08-25 jprocterexcluded methods related to broken Jmol applet binding... tree | commitdiff
2010-08-20 jprocterrefactored external structure viewer binding API calls... tree | commitdiff
2010-08-06 jprocterinteractive/batch mode test for groovy scripting (See... tree | commitdiff
2010-06-29 jprocternew ajax api methods for linking existing jmol viewers... tree | commitdiff
2010-06-18 jprocternew jmol/pdb relates api calls tree | commitdiff
2010-06-12 jprocterdocumented the -colour command line argument. tree | commitdiff
2010-06-09 jprocterOSX look and feel JAL-577 tree | commitdiff
2010-06-08 jprocterfollowSelections flag now set via user preferences... tree | commitdiff
2010-05-14 jprocterstandard function for bootstrapping discovery threads tree | commitdiff
2010-05-14 jprocterallow initLogger to be called multiple times tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2010-04-26 jprocterbuild date output in the About box, and build details... tree | commitdiff
2010-04-23 jprocterdefault value boolean parameter getter tree | commitdiff
2010-04-14 jprocterprofile visualizations are now logos tree | commitdiff
2010-03-30 jproctergroup autoannotation and consensus display settings tree | commitdiff
2010-02-10 jprocterdas feature fetch followed by png output fixed (bug... tree | commitdiff
2010-02-09 jproctergroupURL link preference variables tree | commitdiff
2009-11-23 jprocterinitialise current and defaultAlignFrame and debug... tree | commitdiff
2009-11-13 jproctermake fileparse errors easier to debug by dumping file... tree | commitdiff
2009-11-09 jproctermore spin on GA prompt tree | commitdiff
2009-11-09 jprocteruser friendly GA and privacy statement tree | commitdiff
2009-10-13 jprocterprompt user to enable usage stats tree | commitdiff
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