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JAL-3066 Fix NullPointerException thrown when showing HMMER run dialog
[jalview.git]
/
src
/
jalview
/
controller
/
AlignViewController.java
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2020-03-20
Jim Procter
JAL-3549 javadoc
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2020-03-09
gmungoc
JAL-3549 JAL-3305 no Sort By Score / Density if no...
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-04-20
gmungoc
JAL-2791 tailored message if find fails on selection...
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2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
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2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
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2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
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2017-11-02
gmungoc
JAL-2808 spike updated with latest
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2017-11-02
gmungoc
JAL-2808 refactored getColor() checks feature visibility
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2017-10-31
gmungoc
Merge branch 'bug/JAL-2791selectVisibleFeatures' into
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2017-10-31
gmungoc
JAL-2791 select columns by _visible_ features
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2017-10-30
gmungoc
JAL-2791 check feature visibility when selecting columns
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
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2017-10-24
gmungoc
JAL-2738 update spike branch with latest
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2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-01
gmungoc
JAL-2488 remove finalize methods
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
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2017-05-31
gmungoc
JAL-2574 preparation for Sequence.findFeatures(col1...
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2017-05-19
gmungoc
JAL-2490 only count sequences where feature overlap...
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2017-05-15
gmungoc
JAL-2490 use findFeatures() for efficient feature overl...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-23
Jim Procter
Merge branch 'bug/JAL-2323disulfideOverview' into develop
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2016-11-21
gmungoc
JAL-2333 corrected select columns with 'contact' feature
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2016-10-30
Jim Procter
JAL-1738 JAL-345 new controller method based on mark...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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2016-08-24
gmungoc
JAL-1424 recode calls to MessageManager to allow code...
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2016-08-23
gmungoc
JAL-2174 markColumns() refactored inside ColumnSelection
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2016-08-19
gmungoc
JAL-2174 bug fixes + refactoring to allow + unit tests
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2016-08-18
gmungoc
JAL-1445 status message '...not containing...' for...
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2016-07-12
gmungoc
FileFormat enum wip changes
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2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
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2016-02-12
gmungoc
JAL-2008 avoid unnecessary repaints; signatures changed...
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2016-02-04
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-02-04
gmungoc
JAL-599 bug fixed so array of visible types is populated
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2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-06-05
Jim Procter
JAL-1482 JAL-653 refactor feature file import code...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
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2015-02-12
Jim Procter
JAL-1350 pass the columnselection rather then selected...
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2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
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2015-01-20
Charles Ofoegbu
Further abstractions and clean up
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
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2014-09-23
darolmar
JAL-1355
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2014-08-08
j.procter@dundee...
tidy imports
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2014-08-08
j.procter@dundee...
JAL-1483 sort by feature score/density made first class...
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2014-06-06
Jim Procter
JAL-1517 source formatting
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-05-23
Jim Procter
JAL-1445 extend functionality to select or toggle selec...
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2014-02-17
Jim Procter
JAL-1445 ported routine for selecting containing/non...
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2014-02-17
Jim Procter
JAL-535 interface for GUI state update methods that...
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2013-10-07
Jim Procter
JAL-1385 Alignment view controller logic implementation...
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