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Takes string[] instead of seq[]
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
2006-07-13
amwaterhouse
Sequence is private
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2006-07-12
amwaterhouse
sequences are private in SequenceGroup
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2006-07-07
amwaterhouse
Redundant Remove Redundancy Removed
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2006-06-09
amwaterhouse
getSequencesArray
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2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
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2006-05-10
amwaterhouse
addAnnotation with seqRef
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2006-04-04
amwaterhouse
Pad gaps removes excess gaps
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2006-03-16
amwaterhouse
getHiddenSequences
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2006-02-15
amwaterhouse
Removed SuperGroup
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2006-02-03
amwaterhouse
Add annotation with sequence ref updated
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2006-01-30
amwaterhouse
AddAnnotation with start index
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2006-01-11
jprocter
refactored Alignframe padGaps code to Alignment and...
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2005-12-22
amwaterhouse
Watch for trim left/right null widths
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2005-12-06
amwaterhouse
after merge
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2005-09-22
amwaterhouse
isNucleotide
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2005-07-06
amwaterhouse
Remove group if sequences are null
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2005-06-30
amwaterhouse
Formatting changes
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2005-06-08
amwaterhouse
replace space
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-05-26
jprocter
fixed use of PID rather than 'Comparison' Alignment...
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2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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2005-05-12
amwaterhouse
conservation removed
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2005-05-03
amwaterhouse
1.1 compatible
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2005-04-28
amwaterhouse
set gap char modified
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2005-04-01
amwaterhouse
Alignment Annotation added
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2005-02-18
amwaterhouse
featuresAdded = false
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2005-02-11
amwaterhouse
dont add new seqs to group
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2005-02-10
amwaterhouse
dont add new sequences to null groups!
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2005-02-10
amwaterhouse
isAligned method added
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2005-01-24
amwaterhouse
Allow removal of colour when deleting groups
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2005-01-21
amwaterhouse
SuperGroups added
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2005-01-13
amwaterhouse
FindAllGroups added
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2004-12-17
amwaterhouse
Use the isGap method in utils
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2004-12-16
amwaterhouse
Remove redundancy implemented
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2004-12-14
amwaterhouse
Hastable is not used anywhere
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2004-12-14
amwaterhouse
If groups doesnt contain group, addition is allowed
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2004-12-03
amwaterhouse
default gap char is -. Getting ready for group select...
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2004-12-01
amwaterhouse
Set gap chararcter replaces all existing gap chars
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2004-11-16
amwaterhouse
SequenceGroup may have name
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2004-11-02
amwaterhouse
Jalview Imported Sources
start
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git://source.jalview.org / jalview.git / history