Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892' into develop
[jalview.git] / src / jalview / datamodel / Alignment.java
2006-07-21 amwaterhouseRemove note
2006-07-13 amwaterhouseSequence is private
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-07-07 amwaterhouseRedundant Remove Redundancy Removed
2006-06-09 amwaterhousegetSequencesArray
2006-05-11 amwaterhouseRecently loaded files, urls, append sequences to Alignment
2006-05-10 amwaterhouseaddAnnotation with seqRef
2006-04-04 amwaterhousePad gaps removes excess gaps
2006-03-16 amwaterhousegetHiddenSequences
2006-02-15 amwaterhouseRemoved SuperGroup
2006-02-03 amwaterhouseAdd annotation with sequence ref updated
2006-01-30 amwaterhouseAddAnnotation with start index
2006-01-11 jprocterrefactored Alignframe padGaps code to Alignment and...
2005-12-22 amwaterhouseWatch for trim left/right null widths
2005-12-06 amwaterhouseafter merge
2005-09-22 amwaterhouseisNucleotide
2005-07-06 amwaterhouseRemove group if sequences are null
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhousereplace space
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-26 jprocterfixed use of PID rather than 'Comparison' Alignment...
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-12 amwaterhouseconservation removed
2005-05-03 amwaterhouse1.1 compatible
2005-04-28 amwaterhouseset gap char modified
2005-04-01 amwaterhouseAlignment Annotation added
2005-02-18 amwaterhousefeaturesAdded = false
2005-02-11 amwaterhousedont add new seqs to group
2005-02-10 amwaterhousedont add new sequences to null groups!
2005-02-10 amwaterhouseisAligned method added
2005-01-24 amwaterhouseAllow removal of colour when deleting groups
2005-01-21 amwaterhouseSuperGroups added
2005-01-13 amwaterhouseFindAllGroups added
2004-12-17 amwaterhouseUse the isGap method in utils
2004-12-16 amwaterhouseRemove redundancy implemented
2004-12-14 amwaterhouseHastable is not used anywhere
2004-12-14 amwaterhouseIf groups doesnt contain group, addition is allowed
2004-12-03 amwaterhousedefault gap char is -. Getting ready for group select...
2004-12-01 amwaterhouseSet gap chararcter replaces all existing gap chars
2004-11-16 amwaterhouseSequenceGroup may have name
2004-11-02 amwaterhouseJalview Imported Sources start