source.jalview.org Git - jalview.git/history - src/jalview/datamodel/Alignment.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / datamodel / Alignment.java

2006-07-26	jprocter	Implemented CIGAR representation of an Alignment view...	blob \| commitdiff
2006-07-26	amwaterhouse	seqs[j] replaces current	blob \| commitdiff \| diff to current
2006-07-26	amwaterhouse	Remove left, right, empty cols work on hidden reps	blob \| commitdiff \| diff to current
2006-07-25	amwaterhouse	If seq has a dataset, dont clear it	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	Remove note	blob \| commitdiff \| diff to current
2006-07-13	amwaterhouse	Sequence is private	blob \| commitdiff \| diff to current
2006-07-12	amwaterhouse	sequences are private in SequenceGroup	blob \| commitdiff \| diff to current
2006-07-07	amwaterhouse	Redundant Remove Redundancy Removed	blob \| commitdiff \| diff to current
2006-06-09	amwaterhouse	getSequencesArray	blob \| commitdiff \| diff to current
2006-05-11	amwaterhouse	Recently loaded files, urls, append sequences to Alignment	blob \| commitdiff \| diff to current
2006-05-10	amwaterhouse	addAnnotation with seqRef	blob \| commitdiff \| diff to current
2006-04-04	amwaterhouse	Pad gaps removes excess gaps	blob \| commitdiff \| diff to current
2006-03-16	amwaterhouse	getHiddenSequences	blob \| commitdiff \| diff to current
2006-02-15	amwaterhouse	Removed SuperGroup	blob \| commitdiff \| diff to current
2006-02-03	amwaterhouse	Add annotation with sequence ref updated	blob \| commitdiff \| diff to current
2006-01-30	amwaterhouse	AddAnnotation with start index	blob \| commitdiff \| diff to current
2006-01-11	jprocter	refactored Alignframe padGaps code to Alignment and...	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	Watch for trim left/right null widths	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	after merge	blob \| commitdiff \| diff to current
2005-09-22	amwaterhouse	isNucleotide	blob \| commitdiff \| diff to current
2005-07-06	amwaterhouse	Remove group if sequences are null	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	replace space	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-26	jprocter	fixed use of PID rather than 'Comparison' Alignment...	blob \| commitdiff \| diff to current
2005-05-25	jprocter	tidied up system.out messages and moved many to stderr.	blob \| commitdiff \| diff to current
2005-05-12	amwaterhouse	conservation removed	blob \| commitdiff \| diff to current
2005-05-03	amwaterhouse	1.1 compatible	blob \| commitdiff \| diff to current
2005-04-28	amwaterhouse	set gap char modified	blob \| commitdiff \| diff to current
2005-04-01	amwaterhouse	Alignment Annotation added	blob \| commitdiff \| diff to current
2005-02-18	amwaterhouse	featuresAdded = false	blob \| commitdiff \| diff to current
2005-02-11	amwaterhouse	dont add new seqs to group	blob \| commitdiff \| diff to current
2005-02-10	amwaterhouse	dont add new sequences to null groups!	blob \| commitdiff \| diff to current
2005-02-10	amwaterhouse	isAligned method added	blob \| commitdiff \| diff to current
2005-01-24	amwaterhouse	Allow removal of colour when deleting groups	blob \| commitdiff \| diff to current
2005-01-21	amwaterhouse	SuperGroups added	blob \| commitdiff \| diff to current
2005-01-13	amwaterhouse	FindAllGroups added	blob \| commitdiff \| diff to current
2004-12-17	amwaterhouse	Use the isGap method in utils	blob \| commitdiff \| diff to current
2004-12-16	amwaterhouse	Remove redundancy implemented	blob \| commitdiff \| diff to current
2004-12-14	amwaterhouse	Hastable is not used anywhere	blob \| commitdiff \| diff to current
2004-12-14	amwaterhouse	If groups doesnt contain group, addition is allowed	blob \| commitdiff \| diff to current
2004-12-03	amwaterhouse	default gap char is -. Getting ready for group select...	blob \| commitdiff \| diff to current
2004-12-01	amwaterhouse	Set gap chararcter replaces all existing gap chars	blob \| commitdiff \| diff to current
2004-11-16	amwaterhouse	SequenceGroup may have name	blob \| commitdiff \| diff to current
2004-11-02	amwaterhouse	Jalview Imported Sources start	blob \| commitdiff \| diff to current

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