javadoc
[jalview.git] / src / jalview / datamodel / AlignmentI.java
2007-05-02 jprocterreturn flag indicating if annotations were actually...
2007-05-01 jprocterjavadoc
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec...
2007-04-27 jproctergetProperties returns nullk for no properties
2007-04-27 jprocterdocumentation and getProperties method
2007-04-25 amwaterhousealignmentProperties added
2007-04-19 jprocterjavadoc note on padding AlignmentAnnotation to alignmen...
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef...
2007-04-02 amwaterhouseDestroy alignment moved to finalize
2007-04-02 amwaterhouseDestroy aligment method added
2007-02-07 amwaterhouseFormatting
2007-01-25 amwaterhouseAnnotation adjustment moved to EditCommand
2007-01-24 amwaterhouseAdjustAnnotations needs position, number and insert
2006-12-21 amwaterhouseremove unnecessary import
2006-10-24 amwaterhousemaxIdLength redundant, deleteCols, trimLeft, removeGaps...
2006-10-12 amwaterhouseHiddenSequences now array, not hashtable
2006-10-06 amwaterhouseAAFrequency optimized
2006-08-21 amwaterhouseheader updated
2006-08-21 jprocterremoveGaps method can record changes in alignment colum...
2006-08-14 amwaterhousefindSequenceMatch returns multiple sequences
2006-07-26 jprocterImplemented CIGAR representation of an Alignment view...
2006-07-26 amwaterhouseRemove left, right, empty cols work on hidden reps
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-07-07 amwaterhouseRedundant Remove Redundancy Removed
2006-06-09 amwaterhousegetSequencesArray
2006-05-10 amwaterhouseaddAnnotation with seqRef
2006-03-16 amwaterhousegetHiddenSequences
2006-02-15 amwaterhouseRemoved SuperGroup
2006-02-03 amwaterhouseAdd annotation with sequence ref updated
2006-01-30 amwaterhouseAddAnnotation with start index
2006-01-11 jprocterrefactored Alignframe padGaps code to Alignment and...
2005-12-06 amwaterhouseafter merge
2005-09-22 amwaterhouseisNucleotide
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-04-01 amwaterhouseAlignment Annotation added
2005-02-10 amwaterhouseisAligned method added
2005-01-21 amwaterhouseSuperGroups added
2005-01-13 amwaterhouseFindAllGroups added
2004-12-01 amwaterhouseGapchar is a char, not string
2004-11-16 amwaterhouseSequenceGroup may have name
2004-11-02 amwaterhouseJalview Imported Sources start