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index number for contiguous part of mapped sequence feature
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentI.java
2007-11-30
jprocter
case invariant matching of seqeunce feature to sequence...
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2007-06-17
jprocter
AlignedCodonFrame holds mapping information between...
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2007-05-02
jprocter
return flag indicating if annotations were actually...
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2007-05-01
jprocter
javadoc
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2007-05-01
jprocter
removeAlignmentAnnotation only removes annotation objec...
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2007-04-27
jprocter
getProperties returns nullk for no properties
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2007-04-27
jprocter
documentation and getProperties method
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2007-04-25
amwaterhouse
alignmentProperties added
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2007-04-19
jprocter
javadoc note on padding AlignmentAnnotation to alignmen...
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2007-04-17
jprocter
copy constructors and AlignmentAnnotation sequenceRef...
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2007-04-02
amwaterhouse
Destroy alignment moved to finalize
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2007-04-02
amwaterhouse
Destroy aligment method added
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2007-02-07
amwaterhouse
Formatting
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2007-01-25
amwaterhouse
Annotation adjustment moved to EditCommand
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2007-01-24
amwaterhouse
AdjustAnnotations needs position, number and insert
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2006-12-21
amwaterhouse
remove unnecessary import
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2006-10-24
amwaterhouse
maxIdLength redundant, deleteCols, trimLeft, removeGaps...
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2006-10-12
amwaterhouse
HiddenSequences now array, not hashtable
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2006-10-06
amwaterhouse
AAFrequency optimized
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2006-08-21
amwaterhouse
header updated
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2006-08-21
jprocter
removeGaps method can record changes in alignment colum...
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2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
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2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
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2006-07-26
amwaterhouse
Remove left, right, empty cols work on hidden reps
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2006-07-12
amwaterhouse
sequences are private in SequenceGroup
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2006-07-07
amwaterhouse
Redundant Remove Redundancy Removed
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2006-06-09
amwaterhouse
getSequencesArray
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2006-05-10
amwaterhouse
addAnnotation with seqRef
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2006-03-16
amwaterhouse
getHiddenSequences
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2006-02-15
amwaterhouse
Removed SuperGroup
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2006-02-03
amwaterhouse
Add annotation with sequence ref updated
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2006-01-30
amwaterhouse
AddAnnotation with start index
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2006-01-11
jprocter
refactored Alignframe padGaps code to Alignment and...
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2005-12-06
amwaterhouse
after merge
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2005-09-22
amwaterhouse
isNucleotide
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2005-06-30
amwaterhouse
Formatting changes
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-04-01
amwaterhouse
Alignment Annotation added
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2005-02-10
amwaterhouse
isAligned method added
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2005-01-21
amwaterhouse
SuperGroups added
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2005-01-13
amwaterhouse
FindAllGroups added
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2004-12-01
amwaterhouse
Gapchar is a char, not string
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2004-11-16
amwaterhouse
SequenceGroup may have name
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2004-11-02
amwaterhouse
Jalview Imported Sources
start
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git://source.jalview.org / jalview.git / history