javadoc
[jalview.git] / src / jalview / datamodel / Sequence.java
2007-05-10 jprocterbugfix on copy only referenced annotation in copy const...
2007-05-02 jproctersubsequence bound checks and constructor for selectivel...
2007-04-26 jprocterget annotation by label string
2007-04-26 amwaterhouseremove should be removeElement
2007-04-23 amwaterhouseremove alignmentAnnotation added
2007-04-18 jprocterjava 1.1 compliance
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef...
2007-03-19 jprocterequals operation used for canonicalisation of DBRefList...
2007-02-07 amwaterhouseFormatting
2007-01-31 amwaterhousemake new dataset seq if residues deleted
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-19 jprocterdatasetSequence derive method and some checks
2007-01-18 amwaterhouseSet description on copy
2006-12-21 amwaterhousecheck on sequence length
2006-12-05 amwaterhouseSequence is char []
2006-11-20 amwaterhouseMust copy old dbrefs
2006-11-13 amwaterhouseDont readd identical DBRef
2006-11-13 amwaterhouseSequence colour moved to viewport
2006-11-08 amwaterhouseSet description
2006-10-30 amwaterhousedeleteSequenceFeature
2006-10-26 amwaterhouseNo need to reduce length if inserting more gaps at...
2006-10-24 amwaterhousechangeCase, removeGaps moved to commands package
2006-10-06 jprocterjavadoc
2006-08-21 amwaterhouseheader updated
2006-08-21 jprocterremove gaps method from AlignFrame.remove_gaps_actionPe...
2006-08-14 jprocterfixed off by one bug in end sequence from getSubSequenc...
2006-08-13 jprocterfixed end-residue bug and subjob panel names bug
2006-08-09 jprocternew SequenceI method for making a sub sequence from...
2006-07-21 amwaterhouseDBRef is an array, not vector
2006-07-18 jprocteruse of GapChars
2006-07-13 amwaterhouseSequence is private
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-06-15 amwaterhouseMaintain status and position only for uniprot parsing
2006-06-09 amwaterhouseRemove getsfarray
2006-05-10 amwaterhouseChanges case to end of alignment
2006-05-02 amwaterhouseToggle case added to popup menu
2006-04-28 amwaterhouseMake sure end is less than sequence width
2006-04-28 amwaterhousechangeCase
2006-03-24 amwaterhouseAdd check if sequence already exists
2006-03-16 amwaterhouseHiddenSequence methods
2006-02-24 amwaterhouseFeatures are now an array, not vector
2006-02-03 amwaterhousehas ref to annotation
2005-12-22 amwaterhouseREGEX CANNOT BE STATIC
2005-12-06 amwaterhouseafter merge
2005-09-30 amwaterhouseRemove redundancy in Eclipse
2005-07-29 amwaterhouseif endRes <1, calc the endRes
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-23 jprocteradded some assertions and rangechecks for insert/delete...
2005-05-05 amwaterhousepdbfile details not essential to sequence
2005-05-03 amwaterhouse1.1 compatible
2005-04-06 jprocterNew method for helping to quickly map different aligned...
2005-03-09 amwaterhouseallows deletion of chars
2005-02-11 amwaterhouseend of seq adjustments
2005-02-11 amwaterhousewatch out for end of seq in findposition
2005-02-10 amwaterhousewatch end of sequence when asking for (start, end)
2005-02-04 amwaterhouseSequenceFeature display added
2004-12-15 amwaterhouseisGap method added to utils
2004-11-18 amwaterhouseupdates
2004-11-16 amwaterhouseinitial colour of sequence is black
2004-11-02 amwaterhouseJalview Imported Sources start