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JAL-2843 add isByAttribute to interface for convenience
[jalview.git]
/
src
/
jalview
/
datamodel
/
2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
tree
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commitdiff
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
tree
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commitdiff
2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
tree
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commitdiff
2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 update spike to latest
tree
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commitdiff
2017-11-24
gmungoc
JAL-2808 refine FeatureMatcher interface and matcher...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 update spike to latest (filter range tooltip...
tree
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commitdiff
2017-11-23
gmungoc
JAL-2808 refactor KeyedMatcher as FeatureMatcher with...
tree
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commitdiff
2017-11-22
gmungoc
JAL-2069 spike updated with latest (FeatureTypeSettings)
tree
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commitdiff
2017-11-22
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-22
gmungoc
JAL-2808 capture feature attributes datatype (Character...
tree
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commitdiff
2017-11-17
Jim Procter
JAL-2698 source code licencing
tree
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commitdiff
2017-11-17
Jim Procter
Merge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation...
tree
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commitdiff
2017-11-16
Jim Procter
Merge branch 'bug/JAL-2829deleteCharsWithGaps' into...
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 support filter/colour by nested attribute...
tree
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commitdiff
2017-11-13
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 allow CalcId to match on String equivalence...
doc/JAL-2494_JAL-2828_mergefindAnnotation
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 refactored duplicate code for searching lists...
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 add 'by attribute' options to graduated featur...
tree
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commitdiff
2017-11-03
gmungoc
JAL-2808 JAL-2069 record feature attributes description...
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 new Filters tab in Feature Settings
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 convenience method to get attribute as String
tree
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commitdiff
2017-10-30
gmungoc
JAL-2792 Javadoc updates
tree
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commitdiff
2017-10-30
gmungoc
JAL-2808 remember attribute keys by feature type
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-27
gmungoc
JAL-2792 include source in copy constructor; null point...
tree
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commitdiff
2017-10-27
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-10-27
gmungoc
JAL-2792 capture feature metadata and render in Feature...
tree
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commitdiff
2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
tree
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commitdiff
2017-10-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-10-26
gmungoc
JAL-2792 html table for Feature Details report
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 tidy Javadoc, remove debug logging
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-24
gmungoc
Merge branch 'develop' into features/JAL-1793VCF; lambd...
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2682parseId' into develop
tree
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commitdiff
2017-10-20
gmungoc
Push 1793 latest to spike branch
tree
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commitdiff
2017-10-19
gmungoc
JAL-2755 add missing Javadoc
tree
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commitdiff
2017-10-11
gmungoc
JAL-2772 check array bounds for sequence access
bug/JAL-2772pdbArrayBounds
tree
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commitdiff
2017-10-11
gmungoc
Merge branch 'bug/JAL-2742' into develop
tree
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commitdiff
2017-10-10
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-10-09
gmungoc
JAL-2480 use interface type for sequenceFeatureStore
tree
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commitdiff
2017-10-05
gmungoc
JAL-2738 update spikes/mungo
tree
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commitdiff
2017-10-05
gmungoc
JAL-2744 add score to feature details report, descripti...
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-29
gmungoc
JAL-2744 indent CSQ lines to catch the eye
tree
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commitdiff
2017-09-28
gmungoc
JAL-1796 GeneLociI as distinguished DBRefEntry
tree
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commitdiff
2017-09-28
gmungoc
JAL-2744 simple Feature Details report from Popup menu
tree
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commitdiff
2017-09-26
kiramt
JAL-2742 fixed
tree
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commitdiff
2017-09-26
gmungoc
JAL-2738 promote setGeneLoci to SequenceI!
tree
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commitdiff
2017-09-25
gmungoc
JAL-2738 getGeneLoci promoted to SequenceI
tree
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commitdiff
2017-09-25
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-09-25
gmungoc
JAL-2525 return no features if none matches ontology...
tree
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commitdiff
2017-09-22
gmungoc
JAL-2738 correct handling of reverse strand genes
tree
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commitdiff
2017-09-21
gmungoc
JAL-2738 GeneLoci holds mapping of sequence to chromosome
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2675 source license
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'bug/JAL-2665-2.10.2b' into documentation...
bug/JAL-2673_mergewithproblem
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2527' into documentation...
tree
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commitdiff
2017-09-01
gmungoc
JAL-2488 remove finalize methods
tree
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commitdiff
2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
tree
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commitdiff
2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
tree
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commitdiff
2017-08-28
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-08-28
kiramt
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2017-08-28
kiramt
JAL-2665 Changes for review comments; printing with...
bug/JAL-2665
tree
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commitdiff
2017-08-23
gmungoc
JAL-2682 non-regex sequence id parsing, and tests added
tree
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commitdiff
2017-08-22
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-16
kiramt
JAL-2665 Added hidden columns group selection - almost...
tree
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commitdiff
2017-08-16
kiramt
JAL-2665 Added sequence group update event.
tree
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commitdiff
2017-08-09
gmungoc
JAL-2480 inline one method, improve comments
tree
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commitdiff
2017-08-01
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-22
kiramt
Merge branch 'develop' into feature/JAL-2611
tree
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commitdiff
2017-07-19
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-13
kiramt
JAL-2613 Unit tests and a fix. Phew.
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 additions to unit test, check for negative...
tree
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commitdiff
2017-07-05
gmungoc
JAL-147 prevent overview box move up over hidden first...
tree
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commitdiff
2017-06-30
gmungoc
JAL-2505 correct handling of change of feature type
tree
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commitdiff
2017-06-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-29
kiramt
JAL-2597 Fix and unit test
bug/JAL-2597
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-24
gmungoc
Merge branch 'features/JAL-2446NCList' into spikes...
tree
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commitdiff
2017-06-24
gmungoc
JAL-2547 fix case of gap followed by enclosing contact...
tree
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commitdiff
2017-06-24
gmungoc
Merge branch 'features/JAL-2446NCList' into spikes...
tree
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commitdiff
2017-06-23
gmungoc
JAL-1858 handle hidden columns when computing region...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-22
gmungoc
JAL-2480 simpler and safer test to avoid adding duplicates
tree
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commitdiff
2017-06-21
gmungoc
JAL-2480 tidy generic initialisations, SequenceFeatures...
tree
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commitdiff
2017-06-20
gmungoc
JAL-2526 don't retain lastColumnPosition from an invali...
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
tree
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commitdiff
2017-06-12
kiramt
JAL-2591 Updates following code review
tree
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commitdiff
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