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JAL-4059 Revert libjs/MiGLayout as new miglayout transpile of 4.0 includes reference...
[jalview.git]
/
src
/
jalview
/
ext
/
jmol
/
JmolParser.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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2023-06-30
James Procter
JAL-4216 compute size of annotation using start/end...
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2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
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2023-05-01
James Procter
JAL-3858 report errors when trying to parse JSON to...
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2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
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2023-03-25
Ben Soares
JAL-629 improvements to argparser toString. Improvement...
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2023-03-02
Ben Soares
JAL-629 Removal of unnecessary methods. Set pLTTD tempf...
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2023-03-02
Ben Soares
JAL-629 Some refactoring to allow more flexible use...
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2023-01-24
James Procter
JAL-629 need to delay call to AlignFile.parse() if...
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2023-01-11
Ben Soares
JAL-629 refactoring TFType. Remove i18n identification...
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2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
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2022-10-17
Jim Procter
JAL-2349 JAL-3855 Integrate pAE retrieval in StructureF...
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2022-10-15
Jim Procter
JAL-3855 import pAE when StructureSelectionManager...
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2022-10-07
Jim Procter
Fix for JAL-4075 - don’t write a label in secondary...
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2022-10-06
Jim Procter
JAL-1551 formatting
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2022-10-06
Jim Procter
JAL-3895 alphafold colours via pluggable annotation...
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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2021-09-20
Jim Procter
JAL-3829 make sure structure data type reflects actual...
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2021-09-14
Jim Procter
JAL-3855 detect an alphafold model and import its tempe...
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2018-11-14
gmungoc
JAL-3032 don't throw Exception to signal chain not...
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2018-08-27
hansonr
JAL-3026 Jmol functioning; some issues
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2018-08-21
hansonr
mc_view references were MCview
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2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
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2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
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2016-10-17
tcofoegbu
JAL-2262 JAL-2195 Improvement to set PDBId availability...
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2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
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2016-10-11
gmungoc
JAL-2233 reverted changes to Jmol logging levels
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2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
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2016-10-05
Jim Procter
JAL-2189 source formatting
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2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
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2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
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2016-09-14
Jim Procter
JAL-2164 create RESNUM features with padding the same...
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2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
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2016-09-07
Jim Procter
JAL-1803 JAL-1919 set type when structure file is parsed
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2016-08-31
tcofoegbu
JAL-2148 further enhancment to CA HETATM processing
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2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
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2016-08-01
tcofoegbu
JAL-2164 bugfix to convert insCodes of '\000' to '...
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2016-07-22
tcofoegbu
JAL-2148 Bugfix in structureImportSettings string-to...
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2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
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2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
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2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 fix name for flag controlling additio...
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2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
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2016-07-13
tcofoegbu
JAL-2135 minor house-keeping
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2016-07-12
tcofoegbu
JAL-2135 NPE bugfix when parsing a structure file with...
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2016-07-11
gmungoc
file format enum wip changes
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2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
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diff to current
2016-07-01
tcofoegbu
JAL-2135 bugfix for error preventing processing of...
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2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
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2016-04-06
tcofoegbu
JAL-2047 JAL-1919 fixed empty tooltip text when a cell...
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2016-03-24
tcofoegbu
JAL-1919 Added ability to generate temprature factor...
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2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
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2016-03-11
tcofoegbu
JAL-1818 reimplemented sequence and annotation processi...
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2016-03-03
tcofoegbu
JAL-1919 PDBfile and JmolParser refactor
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2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
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