Merge branch 'develop' into feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_na...
[jalview.git] / src / jalview / ext / jmol /
2017-06-09 Jim ProcterMerge branch 'develop' into features/JAL-2349_matrixvis
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-12 gmungocJAL-2632 corrected lookup of residue colour
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-22 Jim ProcterMerge branch 'features/JAL-2177_update_jmol_to_14.6...
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-17 tcofoegbuJAL-2262 JAL-2195 Improvement to set PDBId availability...
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has...
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
2016-10-10 tcofoegbuJAL-2262 JAL-2195 bug fix for mapping local structure...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser...
2016-09-14 Jim ProcterJAL-2164 create RESNUM features with padding the same...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed
2016-08-31 tcofoegbuJAL-2148 further enhancment to CA HETATM processing
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of...
2016-08-01 tcofoegbuJAL-2164 bugfix to convert insCodes of '\000' to '...
2016-07-22 tcofoegbuJAL-2148 Bugfix in structureImportSettings string-to...
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati...
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling additio...
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-13 tcofoegbuJAL-2135 minor house-keeping
2016-07-12 tcofoegbuJAL-2135 NPE bugfix when parsing a structure file with...
2016-07-11 gmungocfile format enum wip changes
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-07-01 tcofoegbuJAL-2135 bugfix for error preventing processing of...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down...
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol
2016-04-06 tcofoegbuJAL-2047 JAL-1919 fixed empty tooltip text when a cell...
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor...
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi...
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2015-12-03 gmungocJAL-1827 code and comment tidy up
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous...
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not...
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin...
2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns...
2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback...
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-08-05 Jim ProcterJAL-1821 patch for completeness - first model number...
2015-08-03 Jim ProcterJAL-1821 JAL-1759 reinstate rotation speed configuratio...
2015-08-03 Jim ProcterJAL-1821 JAL-1759 updated Jmol has different model...
2015-08-03 Jim ProcterJAL-1821 avoid race condition when multiple structures...
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics
2015-06-30 gmungocJAL-1759 JMol now Jmol !
2015-06-29 gmungocJAL-1759 correct conversion of Jmol Chain.chainId ...
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure...
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into...
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB...
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar...
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-09-23 darolmarJAL-1355
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope...
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