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[jalview.git] / src / jalview / ext / rbvi / chimera /
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... tree | commitdiff
2022-10-28 Jim ProcterJAL-2961 centerViewOn command for structure viewers... tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating... tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2021-10-18 Jim ProcterJAL-3905 Fix: wait for response when sending mouseovers... bug/r2_11_2/JAL-3904_structureviewermenu tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-13 Ben SoaresMerge branch 'develop' into feature/JAL-2422ChimeraX tree | commitdiff
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... tree | commitdiff
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands tree | commitdiff
2020-09-10 gmungocJAL-2422 comments updated re ALTLOC handling tree | commitdiff
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands tree | commitdiff
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections... tree | commitdiff
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled tree | commitdiff
2020-06-25 gmungocJAL-2010 unused prototype method removed tree | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... tree | commitdiff
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... tree | commitdiff
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... tree | commitdiff
2020-06-01 gmungocJAL-3518 more test coverage for structure commands tree | commitdiff
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol tree | commitdiff
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands... tree | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... tree | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... tree | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class tree | commitdiff
2020-05-11 gmungocJAL-3551 concatenate colour by sequence commands for... tree | commitdiff
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project tree | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... tree | commitdiff
2020-03-16 gmungocJAL-3551 tidying, improved commands, fix Jmol model... tree | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... tree | commitdiff
2020-03-03 gmungocJAL-3158 superseded superposeStructures methods removed tree | commitdiff
2020-03-03 gmungocJAL-3518 more pull up / test coverage of structure... tree | commitdiff
2020-02-29 gmungocJAL-3518 correct override for ChimeraX colour by residues tree | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... tree | commitdiff
2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides tree | commitdiff
2020-02-21 gmungocJAL-2422 tidy of methods and parameters tree | commitdiff
2020-02-21 gmungocJAL-2422 general pull-up/removal of common or unused... tree | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... tree | commitdiff
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... tree | commitdiff
2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for... tree | commitdiff
2020-01-30 gmungocJAL-2422 save/restore ChimeraX session tree | commitdiff
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences tree | commitdiff
2020-01-14 gmungocJAL-2422 proof of concept adaptations for ChimeraX... tree | commitdiff
2019-12-13 gmungocJAL-2422 'label' command to highlight ChimeraX residue... tree | commitdiff
2019-12-13 gmungocJAL-2422 write Jalview features to ChimeraX via command... tree | commitdiff
2019-12-13 gmungocJAL-2422 basic proof of concept of ChimeraX opened... tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-18 gmungocJAL-2490 retrieve visible features only tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... tree | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... tree | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... tree | commitdiff
2017-03-08 gmungocJAL-2295 avoid quotes breaking attribute value parsing tree | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... tree | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-12 gmungocJAL-2632 corrected lookup of residue colour tree | commitdiff
2016-12-02 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-30 Jim ProcterMerge branch 'features/JAL-2320_closeChimeraAction... tree | commitdiff
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to... tree | commitdiff
2016-11-16 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2016-11-16 gmungocJAL-2296 don't copy attribute with value False tree | commitdiff
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera tree | commitdiff
2016-11-14 gmungocJAL-2296 new code and refactoring for 'copy Chimera... tree | commitdiff
2016-11-14 gmungocJAL-2295 don't copy 'Chimera' features back to Chimera tree | commitdiff
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features... tree | commitdiff
2016-11-11 gmungocJAL-2295 (optionally) return Chimera command reply tree | commitdiff
2016-11-11 gmungocJAL-2295 correct test for Float.isNaN(score) ! tree | commitdiff
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation tree | commitdiff
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of... tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction tree | commitdiff
2016-11-09 gmungocJAL-2295 set attributes commands include feature value... tree | commitdiff
2016-11-08 gmungocJAL-2295 JAL-1596 method to pass a command script file... tree | commitdiff
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to... tree | commitdiff
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera... tree | commitdiff
2016-11-07 gmungocJAL-2295 small tidy of javadoc only tree | commitdiff
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