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JAL-3404 explicit getModelForPdbFile lookup
[jalview.git]
/
src
/
jalview
/
ext
/
rbvi
/
chimera
/
2019-08-10
gmungoc
JAL-3404 explicit getModelForPdbFile lookup
tree
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commitdiff
2019-08-09
gmungoc
JAL-3990 fix typo in showStructures command for Chimera
tree
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commitdiff
2019-08-09
gmungoc
JAL-3390 refactoring tidy of colourBySequence call...
tree
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commitdiff
2019-08-09
gmungoc
JAL-3390 move StructureCommands to utils package
tree
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commitdiff
2019-08-08
gmungoc
JAL-3390 StructureCommands atomspec helper, corrected...
tree
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commitdiff
2019-08-08
gmungoc
JAL-3400 include sequence name in View | Show Chain...
tree
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commitdiff
2019-08-07
gmungoc
Merge branch 'develop' into feature/JAL-3390hideUnmappe...
tree
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commitdiff
2019-08-06
gmungoc
JAL-3390 first pass refactoring for JalviewJmolBinding...
tree
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commitdiff
2019-08-06
gmungoc
JAL-3390 pull up of getShownResidues() to AAStructureBi...
tree
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commitdiff
2019-08-05
gmungoc
JAL-3390 redraw structures if alignment only and hidden...
tree
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commitdiff
2019-08-05
gmungoc
JAL-3390 new View menu option to hide hidden regions...
tree
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commitdiff
2019-08-05
gmungoc
JAL-3390 Chimera showStructures() respects visible...
tree
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commitdiff
2019-08-02
gmungoc
JAL-3390 first draft of showing only visible alignment...
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2777 patch for whitespace chain
bugs/JAL-2777_whitespaceChain
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-18
gmungoc
JAL-2490 retrieve visible features only
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-12
gmungoc
JAL-2480 renamed java.util.RangeComparator to IntRangeC...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-31
gmungoc
JAL-2430 code tidy, unit test for Jmol hidden column...
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2295 avoid quotes breaking attribute value parsing
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
tree
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commitdiff
2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
tree
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commitdiff
2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
tree
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commitdiff
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
tree
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commitdiff
2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
tree
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commitdiff
2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
tree
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commitdiff
2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
tree
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commitdiff
2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
tree
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commitdiff
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
tree
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commitdiff
2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
tree
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commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
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commitdiff
2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimer...
features/JAL-2320_closeChimeraAction
tree
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commitdiff
2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
tree
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commitdiff
2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
tree
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commitdiff
2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-07-12
gmungoc
FileFormat enum wip changes
tree
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commitdiff
2016-05-31
gmungoc
JAL-2123 use "rlabel" command to highlight with label...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2010 refactoring todo
tree
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commitdiff
2016-02-12
gmungoc
JAL-2010 simple prototype of 'Highlight Selection'...
tree
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commitdiff
2016-02-09
tcofoegbu
JAL-1957 deleted stale comment
tree
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commitdiff
2016-02-09
tcofoegbu
JAL-1957 enabled multi-chain mapping and highlight...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-08-26
gmungoc
JAL-1596 check for null pointer (thread running after...
tree
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commitdiff
2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
tree
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commitdiff
2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
tree
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commitdiff
2015-05-06
gmungoc
JAL-1725 fix for redirect of POST to GET, debug output...
tree
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commitdiff
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
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