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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
ext
/
rbvi
/
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2022-10-28
Jim Procter
JAL-2961 centerViewOn command for structure viewers...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-03-02
Jim Procter
JAL-3619 fix up error messages and try to bail quietly...
tree
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commitdiff
2022-02-15
Jim Procter
JAL-1761 backbone type parameter for configuring which...
tree
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commitdiff
2022-02-15
Jim Procter
JAL-1761 need to pass molecule type when generating...
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2021-10-18
Jim Procter
JAL-3905 Fix: wait for response when sending mouseovers...
bug/r2_11_2/JAL-3904_structureviewermenu
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-13
Ben Soares
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2021-02-04
gmungoc
JAL-2422 a fix and a fudge for two failing ChimeraX...
tree
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commitdiff
2020-09-10
gmungoc
JAL-3518 removed unneeded override in ChimeraCommands
tree
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commitdiff
2020-09-10
gmungoc
JAL-2422 comments updated re ALTLOC handling
tree
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commitdiff
2020-06-29
gmungoc
JAL-3674 more finessed asynchronous structure commands
tree
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commitdiff
2020-06-26
Jim Procter
JAL-3518 fix highlighting in Jalview for selections...
tree
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commitdiff
2020-06-26
Jim Procter
JAL-3672 more efficient when debug not enabled
tree
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commitdiff
2020-06-25
gmungoc
JAL-2010 unused prototype method removed
tree
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commitdiff
2020-06-25
gmungoc
JAL-3518 pull up [get|list]ResidueAttributes to Structu...
tree
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commitdiff
2020-06-23
gmungoc
JAL-3518 separation of ChimeraXManager, pull up of...
tree
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commitdiff
2020-06-23
gmungoc
JAL-3518 pull up closeViewer() and external viewer...
tree
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commitdiff
2020-06-01
gmungoc
JAL-3518 more test coverage for structure commands
tree
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commitdiff
2020-05-29
gmungoc
JAL-3551 null pointer defence while structure files...
feature/JAL-3551Pymol
tree
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commitdiff
2020-05-28
gmungoc
JAL-2422 correct ChimeraX save/open session commands...
tree
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commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
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commitdiff
2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
tree
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commitdiff
2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
tree
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commitdiff
2020-05-11
gmungoc
JAL-3551 concatenate colour by sequence commands for...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 restore saved ChimeraX session from project
tree
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commitdiff
2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
tree
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commitdiff
2020-03-16
gmungoc
JAL-3551 tidying, improved commands, fix Jmol model...
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-03
gmungoc
JAL-3158 superseded superposeStructures methods removed
tree
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commitdiff
2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
tree
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commitdiff
2020-02-29
gmungoc
JAL-3518 correct override for ChimeraX colour by residues
tree
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commitdiff
2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
tree
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commitdiff
2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
tree
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commitdiff
2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
tree
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commitdiff
2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
tree
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commitdiff
2020-01-31
gmungoc
JAL-2422 temporary hacks removed; use hex colours for...
tree
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commitdiff
2020-01-30
gmungoc
JAL-2422 save/restore ChimeraX session
tree
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commitdiff
2020-01-28
gmungoc
JAL-2422 ChimeraX added to Preferences
tree
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commitdiff
2020-01-14
gmungoc
JAL-2422 proof of concept adaptations for ChimeraX...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 'label' command to highlight ChimeraX residue...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 write Jalview features to ChimeraX via command...
tree
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commitdiff
2019-12-13
gmungoc
JAL-2422 basic proof of concept of ChimeraX opened...
tree
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commitdiff
2019-06-14
gmungoc
JAL-3302 transfer visible 'linked' features to Chimera
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2777 patch for whitespace chain
bugs/JAL-2777_whitespaceChain
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-30
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-18
gmungoc
JAL-2490 retrieve visible features only
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-12
gmungoc
JAL-2480 renamed java.util.RangeComparator to IntRangeC...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-31
gmungoc
JAL-2430 code tidy, unit test for Jmol hidden column...
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2295 avoid quotes breaking attribute value parsing
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
tree
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commitdiff
2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
tree
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commitdiff
2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
tree
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commitdiff
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
tree
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commitdiff
2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
tree
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commitdiff
2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
tree
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commitdiff
2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
tree
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commitdiff
2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
tree
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commitdiff
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
tree
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commitdiff
2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
tree
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commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
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commitdiff
2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimer...
features/JAL-2320_closeChimeraAction
tree
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commitdiff
2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
tree
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commitdiff
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