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JAL-2473 revised default minimum dimension for Alignment Frame windows
[jalview.git]
/
src
/
jalview
/
ext
/
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-03
gmungoc
JAL-2105 Ensembl REST now at 5.0
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-31
gmungoc
JAL-2430 code tidy, unit test for Jmol hidden column...
tree
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commitdiff
2017-03-21
gmungoc
JAL-2438 check for null FeatureRenderer
tree
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commitdiff
2017-03-15
gmungoc
JAL-2443 push getResidueBoxColour inside getResidueColour
tree
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commitdiff
2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
tree
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commitdiff
2017-03-08
gmungoc
JAL-2295 avoid quotes breaking attribute value parsing
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
tree
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commitdiff
2017-02-09
gmungoc
Merge branch 'develop' into features/JAL-2379pcaMemory
features/JAL-2379pcaMemory
tree
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commitdiff
2017-01-23
gmungoc
JAL-2379 made SparseMatrix.divide() so as to exactly...
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2017-01-17
gmungoc
JAL-2379 SparseDoubleArray added (for use by SparseMatrix)
tree
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commitdiff
2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
tree
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
tree
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commitdiff
2016-12-09
gmungoc
JAL-2105 updated for reviewed REST version 4.8
tree
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commitdiff
2016-12-08
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-12-07
gmungoc
JAL-2354 handle error response when fetching features
tree
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commitdiff
2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
tree
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commitdiff
2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-2177_update_jmol_to_14.6...
tree
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commitdiff
2016-11-17
gmungoc
JAL-98 javadoc, third party acknowledgements (and very...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
tree
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commitdiff
2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
tree
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commitdiff
2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
tree
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commitdiff
2016-11-16
gmungoc
JAL-2295 don't exclude RESNUM from transfer to Chimera
tree
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commitdiff
2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
tree
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commitdiff
2016-11-14
gmungoc
JAL-2295 don't copy 'Chimera' features back to Chimera
tree
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commitdiff
2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
tree
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commitdiff
2016-11-11
gmungoc
JAL-2295 correct test for Float.isNaN(score) !
tree
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commitdiff
2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
tree
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commitdiff
2016-11-10
gmungoc
JAL-2295 additional tests, stronger sanitisation of...
tree
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commitdiff
2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
tree
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commitdiff
2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimer...
features/JAL-2320_closeChimeraAction
tree
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commitdiff
2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 feature and colour commands refactored to...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
tree
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commitdiff
2016-11-08
gmungoc
JAL-2295 make RangeComparator a top level class for...
tree
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commitdiff
2016-11-07
gmungoc
JAL-2295 small tidy of javadoc only
tree
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commitdiff
2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
tree
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commitdiff
2016-10-27
tcofoegbu
JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
tree
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commitdiff
2016-10-24
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-17
tcofoegbu
JAL-2262 JAL-2195 Improvement to set PDBId availability...
tree
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commitdiff
2016-10-13
gmungoc
JAL-2253 2 second timeout on ping URL, default 5 minute...
feature/JAL-2553ensemblGenomes
tree
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commitdiff
2016-10-13
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
tree
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commitdiff
2016-10-11
gmungoc
Merge branch 'releases/Release_2_10_Branch' into develop
tree
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commitdiff
2016-10-11
gmungoc
JAL-2233 reverted changes to Jmol logging levels
tree
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commitdiff
2016-10-10
tcofoegbu
JAL-2262 JAL-2195 bug fix for mapping local structure...
tree
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commitdiff
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 use full SO in desktop application
tree
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commitdiff
2016-10-05
gmungoc
JAL-2105 update Ensembl REST version to 4.7
tree
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commitdiff
2016-10-03
gmungoc
JAL-2110 JAL-1705 handle not found (400) better
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 throw exception (unhandled) for int overthrow...
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
tree
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commitdiff
2016-10-01
Jim Procter
Merge branch 'develop' into bug/JAL-2210_ensembl_unipro...
tree
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commitdiff
2016-09-30
Jim Procter
JAL-2210 add uniprot+mapping between ENST and ENSP...
tree
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commitdiff
2016-09-30
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
tree
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commitdiff
2016-09-28
Jim Procter
JAL-2210 JAL-2232 check response code before attempting...
tree
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commitdiff
2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
tree
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commitdiff
2016-09-27
Jim Procter
JAL-2210 report stack trace for unexpected exceptions
tree
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commitdiff
2016-09-26
gmungoc
JAL-98 generalised increment() to add() and made faster
tree
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commitdiff
2016-09-23
gmungoc
JAL-98 performance tweaks to use of SparseIntArray
tree
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commitdiff
2016-09-23
gmungoc
JAL-98 Android SparseIntArray added
tree
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commitdiff
2016-09-18
Jim Procter
JAL-1795 JAL-2206 prevent NPE when no data returned...
tree
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commitdiff
2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
tree
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commitdiff
2016-09-14
Jim Procter
JAL-2164 create RESNUM features with padding the same...
tree
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commitdiff
2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
tree
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commitdiff
2016-09-07
Jim Procter
JAL-1803 JAL-1919 set type when structure file is parsed
tree
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commitdiff
2016-08-31
tcofoegbu
JAL-2148 further enhancment to CA HETATM processing
tree
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commitdiff
2016-08-30
Jim Procter
Merge branch 'develop' into merge/develop_bug/JAL-2154p...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-26
gmungoc
JAL-2049 set Ensembl variant source to ENSEMBL if ...
tree
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commitdiff
2016-08-25
Jim Procter
JAL-2106 JAL-2154 cross-refs from Ensembl should verify...
tree
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbR...
tree
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commitdiff
2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
tree
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commitdiff
2016-08-17
gmungoc
JAL-2105 rest versions updated to 4.6, change log link...
tree
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commitdiff
2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
tree
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commitdiff
2016-08-01
tcofoegbu
JAL-2164 bugfix to convert insCodes of '\000' to '...
tree
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commitdiff
2016-07-22
tcofoegbu
JAL-2148 Bugfix in structureImportSettings string-to...
tree
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commitdiff
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