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JAL-4386 - Implementation of substitution matrix and test cases.
[jalview.git]
/
src
/
jalview
/
fts
/
2023-11-13
James Procter
JAL-4236 don’t look for headers in JalviewJS
tree
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commitdiff
2023-11-13
James Procter
JAL-4090 fix JAL-4236 - just put the name of the class...
tree
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
tree
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commitdiff
2023-10-23
James Procter
JAL-4311 failing test case for 3d-beacons epas1_human...
tree
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
tree
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commitdiff
2023-05-20
Ben Soares
JAL-3416 Removed another internal Frame icon from title bar
tree
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commitdiff
2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
features/r2_11_2_alphafold/JAL-2349_JAL-3855
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 patch REST client for changed JSON schema...
tree
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commitdiff
2023-01-20
Jim Procter
JAL-4114 formatting
tree
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commitdiff
2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
tree
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commitdiff
2022-07-25
Ben Soares
JAL-4036 moved a comment block
tree
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commitdiff
2022-07-22
Ben Soares
JAL-4036 Changes made from code review CR-JAL-265
tree
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commitdiff
2022-07-22
Ben Soares
JAL-4036 Add getDbName to the GFTSPanelI and add an...
tree
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commitdiff
2022-07-22
Ben Soares
JAL-4036 removing the query field code from the dropdow...
tree
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commitdiff
2022-07-21
Ben Soares
JAL-4036 Don't autosearch changing index when autosearc...
tree
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commitdiff
2022-07-21
Ben Soares
JAL-4036 add search fieldname to dropdown list
tree
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commitdiff
2022-07-21
Ben Soares
JAL-4036 New configuration, target and pagination proce...
tree
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commitdiff
2022-06-30
Jim Procter
JAL-4036 use the legacy endpoint (and report the FTS...
tree
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commitdiff
2022-06-24
Jim Procter
JAL-3855 update EBI Alphafold barcoded URL generation...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2021-11-19
Jim Procter
JAL-3926 disable autosearch by default
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 open web page for 3d beacons structure by...
features/r2_11_2/JAL-3829_3dbeacons
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 abstract essential TDB metadata from the user...
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-20
Jim Procter
JAL-3829 throw the exception even if it has no message
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3829 move mock query and responses to files
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3829 allow multiple URL mocks and include P01308...
tree
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commitdiff
2021-09-12
Jim Procter
JAL-3829 JalviewJS workarounds/patches
tree
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commitdiff
2021-09-11
Jim Procter
JAL-3829 ensure tests use mocked service - proper excep...
tree
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commitdiff
2021-09-10
Jim Procter
JAL-3829 point at production 3d-beacons url
tree
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commitdiff
2021-09-06
Jim Procter
JAL-3829 look up column in FTS data
tree
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commitdiff
2021-09-06
Jim Procter
JAL-3829 mocking for PDBFTS for related query to Unipro...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 mocking for testing 3D-Beacons FTS endpoint
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3855 don’t need to query Alphafold2 repository...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 Structure chooser specific FTS interface and...
tree
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commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 proof in principle 3d-beacons sequence fetcher...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 fixed up the 3d-beacons data columns definitio...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 JAL-2176 - TODO re unused argument in FTSRestC...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 Javadoc for FTSColumnPreferences
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 removed unneeded attribute in FTS core
tree
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commitdiff
2021-08-30
arngucci
JAL-3832 Gui working, with 3DBeacons parameters
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 check for existence of an alpha fold model...
tree
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commitdiff
2021-04-06
arngucci
JAL-3829 more testing wit tdbeacons data columns and...
arnaud/develop
tree
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commitdiff
2021-04-01
Arnaldo
JAL-3829 attempt to fix my changes to follow the Jira...
tree
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commitdiff
2021-03-29
Arnaldo
fixed last commit
tree
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commitdiff
2021-03-29
Arnaldo
Request now parses the whole structures, need to fix...
tree
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commitdiff
2021-03-25
Arnaldo
TDB.executeRequest fix & test passed
tree
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commitdiff
2021-03-25
Arnaldo
Created 3Dbeacons data_columns.txt Test passed for...
tree
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commitdiff
2021-03-15
Arnaldo
added untracked parsing attempts files
tree
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commitdiff
2021-03-15
Arnaldo
Adding tests for 3DB, currently 2/4 corrects on PanelTest
tree
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commitdiff
2021-03-02
Arnaldo
First commit of 3DB FTS Panel & Restclient
tree
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commitdiff
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
tree
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commitdiff
2020-07-06
gmungoc
JAL-3311 JAL-3141 JAL-3144 tidying obsolete message...
tree
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commitdiff
2020-03-30
gmungoc
JAL-3210 debug logging commented out
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-07-30
gmungoc
JAL-3388 correct class for column 0 Ref Sequence
bug/JAL-3388structureChooserSorting
tree
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commitdiff
2019-07-16
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-07-16
gmungoc
JAL-2987 tolerate null double values when formatting...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-06-04
gmungoc
JAL-2386 avoid duplicate pdbids in free text query
bug/JAL-3286duplicatePdbQuery
tree
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commitdiff
2019-04-16
hansonr
missing check for JavaScript in client response for...
tree
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commitdiff
2019-04-09
hansonr
code formatting only
tree
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commitdiff
2019-04-04
gmungoc
JAL-3220 unneeded main methods removed
tree
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commitdiff
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
tree
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commitdiff
2019-04-03
hansonr
j2sNative clean-up. Fixes problem with second try of...
tree
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commitdiff
2019-04-01
hansonr
JSON refactoring of a few methods; fixing JavaScript...
tree
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commitdiff
2019-03-27
hansonr
isJS cleanup
tree
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-02-12
gmungoc
JAL-3032 default Autosearch to off for JalviewJS
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2019-01-25
hansonr
JSON refactoring
tree
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commitdiff
2018-11-11
hansonr
adds static declaration of AJAX-readable domains
tree
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commitdiff
2018-11-01
gmungoc
Merge branch 'feature/JAL-3144noJTree' into
tree
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commitdiff
2018-10-30
gmungoc
JAL-3144 query URL corrected
tree
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commitdiff
2018-10-30
gmungoc
JAL-3144 spelling, Javadoc, abstract method for JalviewJS
tree
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commitdiff
2018-10-29
gmungoc
JAL-3144 SequenceFetcher without JDatabaseTree
tree
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commitdiff
2018-08-16
gmungoc
JAL-3038 workaround to replace editable combobox with...
tree
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commitdiff
2018-07-25
hansonr
JAL-3026 Java 8 upgrade and JTabbedPane
tree
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commitdiff
2018-07-06
hansonr
JAL-3026 all tabbed panes use JavaScript option
tree
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commitdiff
2018-07-05
hansonr
JAL-3026 comment in main test method in PDbFtsrestClien...
tree
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commitdiff
2018-07-05
hansonr
JAL-3026 fixes MigLayout, JSON parser
tree
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commitdiff
2018-07-04
hansonr
JAL-3026 implements simple REST client
tree
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commitdiff
2018-05-21
gmungoc
JAL-2814 help links from PDB and Uniprot FTS panels
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
tree
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commitdiff
2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
tree
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commitdiff
2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
tree
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commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
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commitdiff
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
tree
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commitdiff
2017-11-15
gmungoc
JAL-2835 spike updated with latest
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 auto search checkbox state stored as user...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 mainFramTabs -> tabs
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 i18n tab label
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 working back button shown for bulk ID retrieva...
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 bulk fetch for PDB IDs
tree
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commitdiff
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