JAL-3049 working tooltip on colours column
[jalview.git] / src / jalview / gui / AlignFrame.java
2016-01-29 gmungocJAL-1705 copy feature settings when opening a split...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-23 gmungocJAL-1705 copy 'show sequence features' setting in ...
2016-01-21 gmungocJAL-1705 AlignmentUtils method renamed
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns...
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe...
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-11-11 tcofoegbumerge
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-08 tcofoegbumerge
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl...
2015-09-18 tcofoegbuJAL-1506 revised implementation to clear only selected...
2015-09-17 tcofoegbuJAL-1774 bugfix for misleading message after trying...
2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in...
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens...
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html...
2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override...
2015-08-27 gmungocJAL-1611 debug sysout suppressed
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
2015-08-25 gmungocJAL-1780 just a spelling change
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ...
2015-08-10 tcofoegbuJAL-1486 fixed flatfile output of visible region for...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 tcofoegbuMerge branch 'features/1769_headless-mode-test' into...
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created...
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-07-01 gmungocJAL-1802 explanatory comment added
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame...
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 tcofoegbuJAL-1780 improvement to ensure export settings dialog...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in...
2015-06-06 Jim ProcterJAL-653 missing imports after rebase
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package
2015-05-29 gmungocJAL-1753 declare field with interface type; check for...
2015-05-29 gmungocJAL-1753 duplicated code refactored to new class Progre...
2015-05-20 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH...
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-15 gmungocJAL-1737 ignore non-positional annotations for display
2015-05-11 James ProcterJAL-1690 make splitframe enabled by default
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible...
2015-05-01 gmungocJAL-1690 refining 'copy format from' as applied to...
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export...
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into develop
2014-11-28 Jim ProcterJAL-1604 formatting
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog
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