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JAL-2110 avoid potential race condition where user changes selection after ‘show...
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2016-07-12
Jim Procter
JAL-2110 avoid potential race condition where user...
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2016-07-12
Jim Procter
JAL-2110 TODO for JAL-2131
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2016-07-06
gmungoc
JAL-2110 cross-refs from protein to show cds not non...
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2016-07-04
gmungoc
JAL-2110 use shared dataset when copying alignment...
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diff to current
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
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diff to current
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
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diff to current
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
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diff to current
2016-07-01
gmungoc
JAL-2110 add 'products' parameter to filter results...
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2016-06-23
Jim Procter
Merge branch 'develop' into merge_JAL-2110
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2016-06-22
gmungoc
JAL-1982 defensive test for null array of annotations
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diff to current
2016-06-22
Jim Procter
JAL-2110 remove hardwired detection of search context...
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2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
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2016-06-14
gmungoc
JAL-2110 fixes to dbref resolution and mappings, use...
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2016-06-09
gmungoc
JAL-2110 work in progress
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2016-06-09
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
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diff to current
2016-06-06
tcofoegbu
JAL-1944 bugfix for wrong alignment numbering when...
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2016-06-03
gmungoc
JAL-2110 random stuff
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2016-06-02
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
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2016-06-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
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2016-06-01
gmungoc
JAL-1424 utility to check resource bundle labels used...
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2016-05-31
tcofoegbu
merge
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diff to current
2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
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diff to current
2016-05-31
gmungoc
JAL-2023 adjustments to mappings added for split frame...
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2016-05-26
gmungoc
JAL-391 add reverse / complement to command history...
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2016-05-26
Jim Procter
JAL-1551 formatting
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diff to current
2016-05-26
Jim Procter
JAL-1552 refactor shared dataflavor hander
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2016-05-26
Jim Procter
JAL-1552 extra debug logging for dataflavor if drop...
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diff to current
2016-05-25
Jim Procter
JAL-1522 patch - try to pick best text dataflavor
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2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
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2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
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diff to current
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
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2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
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diff to current
2016-04-24
Jim Procter
JAL-2077 - reinstate popups on osx
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2016-04-24
Jim Procter
JAL-2075 make GroovyConsole a singleton so tests requir...
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2016-04-22
gmungoc
JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
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2016-04-20
Jim Procter
fix for JAL-2072
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2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
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diff to current
2016-04-01
gmungoc
JAL-1705 ensure the right mapping is used to align...
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2016-04-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
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2016-04-01
gmungoc
JAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
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2016-03-28
gmungoc
JAL-2016 push getFeatureColourScheme(source) into Seque...
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2016-03-28
gmungoc
JAL-2036 update AlignFrame menus when dbreffetcher...
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2016-03-22
gmungoc
JAL-1705 add xref seqs to 'parent' dataset only if...
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2016-03-15
gmungoc
JAL-2016 FeatureSettingsI now FeatureSettingsModelI
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diff to current
2016-03-11
gmungoc
JAL-1705 refactoring etc for fetching Ensembl --> Uniprot
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2016-03-07
gmungoc
JAL-2023 CDS sequences added to / share alignment dataset
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2016-03-01
gmungoc
JAL-1705 align CDS and peptide products to transcripts
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2016-02-22
gmungoc
JAL-1705 first pass at applying preset feature colourin...
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diff to current
2016-02-19
gmungoc
JAL-1705 refactor show products, set initial split...
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2016-02-12
gmungoc
Merge branch 'develop' into
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2016-02-09
tcofoegbu
JAL-1976 Added progress indicators for HTML_SVG and...
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2016-01-29
gmungoc
JAL-1705 copy feature settings when opening a split...
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diff to current
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
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2016-01-23
gmungoc
JAL-1705 copy 'show sequence features' setting in ...
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2016-01-21
gmungoc
JAL-1705 AlignmentUtils method renamed
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2016-01-11
gmungoc
JAL-1989 additional ways to 'mirror' show/hide columns...
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2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
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2015-12-22
gmungoc
JAL-391 new Calculate options to Reverse, Reverse Compl...
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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diff to current
2015-11-11
tcofoegbu
merge
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2015-10-22
tcofoegbu
JAL-1942 JAL-1479 DBRefFetcher refactor
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2015-10-22
gmungoc
JAL-1932 TrimRegionCommand bug fix, tests and purge...
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diff to current
2015-10-08
tcofoegbu
merge
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diff to current
2015-10-07
Jim Procter
JAL-1894 source formatting
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diff to current
2015-09-30
tcofoegbu
JAL-1912 added support of tcoffee annotation and other...
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diff to current
2015-09-18
tcofoegbu
JAL-1774 JAL-1506 revised implementaion for clear highl...
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2015-09-18
tcofoegbu
JAL-1506 revised implementation to clear only selected...
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commitdiff
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diff to current
2015-09-17
tcofoegbu
JAL-1774 bugfix for misleading message after trying...
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diff to current
2015-09-16
tcofoegbu
JAL-1486 off-by-one error bugfix
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diff to current
2015-09-14
gmungoc
JAL-1865 fixed so initial state of annotation sort...
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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diff to current
2015-09-06
Jim Procter
JAL-1655 transfer setting option only displayed in...
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diff to current
2015-09-03
Jim Procter
JAL-1680 JAL-1576 JAL-1233 all conservation and consens...
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2015-09-03
tcofoegbu
JAL-793 use default custom export settings for html...
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2015-09-02
gmungoc
JAL-1843 fixed input/add from textbox; added @Override...
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2015-08-27
gmungoc
JAL-1611 debug sysout suppressed
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diff to current
2015-08-26
gmungoc
JAL-1830 dropped reference counts for mappings, instead...
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2015-08-25
gmungoc
JAL-1780 just a spelling change
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diff to current
2015-08-17
gmungoc
JAL-1829 JAL-1830 refactoring for correct mapping ...
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diff to current
2015-08-10
tcofoegbu
JAL-1486 fixed flatfile output of visible region for...
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diff to current
2015-07-08
gmungoc
JAL-1759 merge from develop
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2015-07-06
tcofoegbu
Merge branch 'features/1769_headless-mode-test' into...
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2015-07-06
tcofoegbu
JAL-1769 fixed headless execution mode and created...
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2015-07-03
gmungoc
Merge branch 'develop' into features/JAL-892varnaToProject
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2015-07-01
gmungoc
JAL-1802 explanatory comment added
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2015-07-01
gmungoc
JAL-1802 handle slide sequences edits in split frame...
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2015-07-01
gmungoc
Merge branch 'develop' into features/JAL-1759jmolUpdate
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2015-06-29
gmungoc
JAL-1799 adjusted annotation height calculation
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2015-06-26
tcofoegbu
JAL-1641 fixed broken functionalities after refactor
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diff to current
2015-06-26
gmungoc
Merge branch 'develop' into features/JAL-892varnaToProject
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diff to current
2015-06-26
gmungoc
Merge branch 'develop' into features/JAL-1759jmolUpdate
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diff to current
2015-06-26
tcofoegbu
JAL-1780 improvement to ensure export settings dialog...
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diff to current
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
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2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
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2015-06-18
gmungoc
JAL-1695 default ENABLE_SPLIT_FRAME to true for desktop
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diff to current
2015-06-17
Jim Procter
Merge branch 'features/JAL-653_gffalignments' into...
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
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