source.jalview.org Git - jalview.git/history - src/jalview/gui/AlignViewport.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / gui / AlignViewport.java

2006-10-18	amwaterhouse	set conserve and quality null if outofmemory	blob \| commitdiff
2006-10-12	amwaterhouse	showQuality may be updated during archive file load	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Calculate alWidth earlier	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Must repaint whole alignPanel	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Consensus and conservation updated in threads	blob \| commitdiff \| diff to current
2006-10-09	jprocter	set firstColumn property for an alignmentView object.	blob \| commitdiff \| diff to current
2006-10-06	amwaterhouse	AAFrequency optimized	blob \| commitdiff \| diff to current
2006-10-05	amwaterhouse	Multiple Views	blob \| commitdiff \| diff to current
2006-09-27	jprocter	fixed tree building exception when one residue or a...	blob \| commitdiff \| diff to current
2006-09-12	amwaterhouse	hideSequence hide all before recalc consensus	blob \| commitdiff \| diff to current
2006-09-07	jprocter	added copy consensus sequence to consensus annotation...	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-17	amwaterhouse	Hold onto selected region when hiding all columns only	blob \| commitdiff \| diff to current
2006-08-17	amwaterhouse	Dont set group null hideCOls	blob \| commitdiff \| diff to current
2006-08-16	amwaterhouse	Fire alignment changed if seqs hidden / revealed	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	Select revealed seqs	blob \| commitdiff \| diff to current
2006-08-10	amwaterhouse	Invert column selection	blob \| commitdiff \| diff to current
2006-08-04	jprocter	recover original data for tree and pca as alignment...	blob \| commitdiff \| diff to current
2006-07-28	amwaterhouse	getIndex replaced with findSeq in seqPanel	blob \| commitdiff \| diff to current
2006-07-26	jprocter	Implemented CIGAR representation of an Alignment view...	blob \| commitdiff \| diff to current
2006-07-26	amwaterhouse	Column hide/show updated	blob \| commitdiff \| diff to current
2006-07-25	amwaterhouse	ColumnSelection moved to datamodel	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	getViewAsString can ignore sequenceGroup	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	show hide stuff moved from columnSelection	blob \| commitdiff \| diff to current
2006-07-18	amwaterhouse	Use selection area with hidden columns in calculations	blob \| commitdiff \| diff to current
2006-07-12	amwaterhouse	sequences are private in SequenceGroup	blob \| commitdiff \| diff to current
2006-04-28	amwaterhouse	validCharWidth moved to viewport	blob \| commitdiff \| diff to current
2006-04-13	amwaterhouse	showInternalMessage jdk1.5 bug	blob \| commitdiff \| diff to current
2006-04-07	amwaterhouse	padGaps set in preferences	blob \| commitdiff \| diff to current
2006-04-07	amwaterhouse	Autocalculate consensus set in preferences	blob \| commitdiff \| diff to current
2006-04-04	amwaterhouse	Autocalculate consensus	blob \| commitdiff \| diff to current
2006-03-24	amwaterhouse	CursoMode added	blob \| commitdiff \| diff to current
2006-03-16	amwaterhouse	HideSequences	blob \| commitdiff \| diff to current
2006-02-24	amwaterhouse	Features added	blob \| commitdiff \| diff to current
2006-01-30	amwaterhouse	Anti alias flag	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	Annotations.Graph can be bargraph, linegraph	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	After merge	blob \| commitdiff \| diff to current
2005-09-22	amwaterhouse	Dont calculate conservation for nucleotides	blob \| commitdiff \| diff to current
2005-09-22	amwaterhouse	Wrap alignment with annotations	blob \| commitdiff \| diff to current
2005-09-15	amwaterhouse	OptionPane warning for out of memory	blob \| commitdiff \| diff to current
2005-09-14	amwaterhouse	System.gc after outofmemory	blob \| commitdiff \| diff to current
2005-09-08	amwaterhouse	update consensus and conservation are in try catch...	blob \| commitdiff \| diff to current
2005-09-01	amwaterhouse	Use propertyListener for alignment edits	blob \| commitdiff \| diff to current
2005-08-22	amwaterhouse	Conservation colour scheme is no more	blob \| commitdiff \| diff to current
2005-08-17	jprocter	Gui Modifications for Service Discovery.	blob \| commitdiff \| diff to current
2005-08-15	amwaterhouse	IgnoreGapsConsensus	blob \| commitdiff \| diff to current
2005-08-09	amwaterhouse	Properties file is used in preference to viewport/cache...	blob \| commitdiff \| diff to current
2005-08-03	amwaterhouse	Use Container to get fontMetrics	blob \| commitdiff \| diff to current
2005-07-11	amwaterhouse	check groupsize is non zero	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-14	amwaterhouse	add value to conservation mouseover	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-27	amwaterhouse	Check if usrCol is null	blob \| commitdiff \| diff to current
2005-05-26	amwaterhouse	DOnt add Conservation graph to every residue	blob \| commitdiff \| diff to current
2005-05-25	amwaterhouse	usercolours changed	blob \| commitdiff \| diff to current
2005-05-25	jprocter	tidied up system.out messages and moved many to stderr.	blob \| commitdiff \| diff to current
2005-05-24	jprocter	added PropertyChangeListeners for alignviewport.alignme...	blob \| commitdiff \| diff to current
2005-05-19	amwaterhouse	% identity is consensus	blob \| commitdiff \| diff to current
2005-05-04	amwaterhouse	renderer removed	blob \| commitdiff \| diff to current
2005-04-29	amwaterhouse	preferences held statically	blob \| commitdiff \| diff to current
2005-04-28	amwaterhouse	Viewport now looks at preferences when loading up	blob \| commitdiff \| diff to current
2005-04-15	amwaterhouse	public vconsensus available for PID and Blosum	blob \| commitdiff \| diff to current
2005-04-14	amwaterhouse	use 3 as the threshold	blob \| commitdiff \| diff to current
2005-04-14	jprocter	consistent percentage gaps filter for conservation...	blob \| commitdiff \| diff to current
2005-04-14	jprocter	added quality calculation from Jalview118, and scale...	blob \| commitdiff \| diff to current
2005-04-08	amwaterhouse	conservation changed to quality	blob \| commitdiff \| diff to current
2005-04-08	amwaterhouse	scale above, left right added	blob \| commitdiff \| diff to current
2005-04-08	jprocter	Alignment quality with funky coloured histograms.	blob \| commitdiff \| diff to current
2005-04-06	amwaterhouse	showAnnotation added	blob \| commitdiff \| diff to current
2005-04-06	amwaterhouse	mosueOver graph gives int, not float	blob \| commitdiff \| diff to current
2005-04-01	amwaterhouse	Alignment Annotation added	blob \| commitdiff \| diff to current
2005-03-23	amwaterhouse	resetSeqLimits altered	blob \| commitdiff \| diff to current
2005-03-17	amwaterhouse	view full id name optional	blob \| commitdiff \| diff to current
2005-03-15	amwaterhouse	selection removed, now SelectionGroup does same job...	blob \| commitdiff \| diff to current
2005-02-18	amwaterhouse	show sequence features is false by default	blob \| commitdiff \| diff to current
2005-02-15	amwaterhouse	abovePIDThreshold added to viewport	blob \| commitdiff \| diff to current
2005-02-10	amwaterhouse	trimmed down	blob \| commitdiff \| diff to current
2005-02-04	amwaterhouse	SequenceFeature display added	blob \| commitdiff \| diff to current
2004-12-15	amwaterhouse	If selection altered, update Rubberband group also	blob \| commitdiff \| diff to current
2004-12-10	amwaterhouse	COnservationSelected and rubberband method setup	blob \| commitdiff \| diff to current
2004-12-03	amwaterhouse	Add globalcolourscheme	blob \| commitdiff \| diff to current
2004-12-01	amwaterhouse	rendergaps(boolean) function added	blob \| commitdiff \| diff to current
2004-11-02	amwaterhouse	Jalview Imported Sources start	blob \| commitdiff \| diff to current

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