2006-11-13 |
amwaterhouse | sequence colours and text colours added |
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2006-11-07 |
amwaterhouse | Tidy up group size after alignmentChanged |
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2006-11-02 |
amwaterhouse | History is per viewport |
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2006-10-30 |
amwaterhouse | conservation lock |
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2006-10-27 |
amwaterhouse | Remove consensus annotation if out of memory |
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2006-10-27 |
amwaterhouse | updatingConsensus, updatingConservation is static ... |
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2006-10-27 |
amwaterhouse | Reset colour schemes and alignmentChanged moved to... |
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2006-10-26 |
amwaterhouse | showConservation, quality, identity not used |
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2006-10-25 |
amwaterhouse | Return if negative width, ie alignment deleted |
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2006-10-18 |
amwaterhouse | set conserve and quality null if outofmemory |
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2006-10-12 |
amwaterhouse | showQuality may be updated during archive file load |
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2006-10-10 |
amwaterhouse | Calculate alWidth earlier |
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2006-10-10 |
amwaterhouse | Must repaint whole alignPanel |
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2006-10-10 |
amwaterhouse | Consensus and conservation updated in threads |
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2006-10-09 |
jprocter | set firstColumn property for an alignmentView object. |
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2006-10-06 |
amwaterhouse | AAFrequency optimized |
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2006-10-05 |
amwaterhouse | Multiple Views |
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2006-09-27 |
jprocter | fixed tree building exception when one residue or a... |
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2006-09-12 |
amwaterhouse | hideSequence hide all before recalc consensus |
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2006-09-07 |
jprocter | added copy consensus sequence to consensus annotation... |
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2006-08-21 |
amwaterhouse | header updated |
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2006-08-17 |
amwaterhouse | Hold onto selected region when hiding all columns only |
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2006-08-17 |
amwaterhouse | Dont set group null hideCOls |
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2006-08-16 |
amwaterhouse | Fire alignment changed if seqs hidden / revealed |
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2006-08-15 |
amwaterhouse | Select revealed seqs |
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2006-08-10 |
amwaterhouse | Invert column selection |
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2006-08-04 |
jprocter | recover original data for tree and pca as alignment... |
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2006-07-28 |
amwaterhouse | getIndex replaced with findSeq in seqPanel |
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2006-07-26 |
jprocter | Implemented CIGAR representation of an Alignment view... |
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2006-07-26 |
amwaterhouse | Column hide/show updated |
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2006-07-25 |
amwaterhouse | ColumnSelection moved to datamodel |
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2006-07-21 |
amwaterhouse | getViewAsString can ignore sequenceGroup |
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2006-07-21 |
amwaterhouse | show hide stuff moved from columnSelection |
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2006-07-18 |
amwaterhouse | Use selection area with hidden columns in calculations |
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2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
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2006-04-28 |
amwaterhouse | validCharWidth moved to viewport |
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2006-04-13 |
amwaterhouse | showInternalMessage jdk1.5 bug |
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2006-04-07 |
amwaterhouse | padGaps set in preferences |
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2006-04-07 |
amwaterhouse | Autocalculate consensus set in preferences |
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2006-04-04 |
amwaterhouse | Autocalculate consensus |
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2006-03-24 |
amwaterhouse | CursoMode added |
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2006-03-16 |
amwaterhouse | HideSequences |
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2006-02-24 |
amwaterhouse | Features added |
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2006-01-30 |
amwaterhouse | Anti alias flag |
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2005-12-22 |
amwaterhouse | Annotations.Graph can be bargraph, linegraph |
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2005-12-06 |
amwaterhouse | After merge |
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2005-09-22 |
amwaterhouse | Dont calculate conservation for nucleotides |
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2005-09-22 |
amwaterhouse | Wrap alignment with annotations |
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2005-09-15 |
amwaterhouse | OptionPane warning for out of memory |
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2005-09-14 |
amwaterhouse | System.gc after outofmemory |
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2005-09-08 |
amwaterhouse | update consensus and conservation are in try catch... |
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2005-09-01 |
amwaterhouse | Use propertyListener for alignment edits |
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2005-08-22 |
amwaterhouse | Conservation colour scheme is no more |
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2005-08-17 |
jprocter | Gui Modifications for Service Discovery. |
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2005-08-15 |
amwaterhouse | IgnoreGapsConsensus |
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2005-08-09 |
amwaterhouse | Properties file is used in preference to viewport/cache... |
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2005-08-03 |
amwaterhouse | Use Container to get fontMetrics |
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2005-07-11 |
amwaterhouse | check groupsize is non zero |
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2005-06-30 |
amwaterhouse | Formatting changes |
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2005-06-14 |
amwaterhouse | add value to conservation mouseover |
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2005-06-08 |
amwaterhouse | Formatted source |
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2005-06-08 |
amwaterhouse | GPL license added |
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2005-05-27 |
amwaterhouse | Check if usrCol is null |
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2005-05-26 |
amwaterhouse | DOnt add Conservation graph to every residue |
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2005-05-25 |
amwaterhouse | usercolours changed |
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2005-05-25 |
jprocter | tidied up system.out messages and moved many to stderr. |
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2005-05-24 |
jprocter | added PropertyChangeListeners for alignviewport.alignme... |
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2005-05-19 |
amwaterhouse | % identity is consensus |
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2005-05-04 |
amwaterhouse | renderer removed |
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2005-04-29 |
amwaterhouse | preferences held statically |
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2005-04-28 |
amwaterhouse | Viewport now looks at preferences when loading up |
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2005-04-15 |
amwaterhouse | public vconsensus available for PID and Blosum |
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2005-04-14 |
amwaterhouse | use 3 as the threshold |
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2005-04-14 |
jprocter | consistent percentage gaps filter for conservation... |
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2005-04-14 |
jprocter | added quality calculation from Jalview118, and scale... |
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2005-04-08 |
amwaterhouse | conservation changed to quality |
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2005-04-08 |
amwaterhouse | scale above, left right added |
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2005-04-08 |
jprocter | Alignment quality with funky coloured histograms. |
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2005-04-06 |
amwaterhouse | showAnnotation added |
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2005-04-06 |
amwaterhouse | mosueOver graph gives int, not float |
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2005-04-01 |
amwaterhouse | Alignment Annotation added |
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2005-03-23 |
amwaterhouse | resetSeqLimits altered |
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2005-03-17 |
amwaterhouse | view full id name optional |
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2005-03-15 |
amwaterhouse | selection removed, now SelectionGroup does same job... |
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2005-02-18 |
amwaterhouse | show sequence features is false by default |
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2005-02-15 |
amwaterhouse | abovePIDThreshold added to viewport |
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2005-02-10 |
amwaterhouse | trimmed down |
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2005-02-04 |
amwaterhouse | SequenceFeature display added |
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2004-12-15 |
amwaterhouse | If selection altered, update Rubberband group also |
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2004-12-10 |
amwaterhouse | COnservationSelected and rubberband method setup |
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2004-12-03 |
amwaterhouse | Add globalcolourscheme |
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2004-12-01 |
amwaterhouse | rendergaps(boolean) function added |
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2004-11-02 |
amwaterhouse | Jalview Imported Sources start |
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