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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
gui
/ AlignmentPanel.java
13 days ago
Jim Procter
JAL-4392 autohide the secondary structure consensus...
patch/JAL-4392_hide_ssconsensus_if_no_data
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commitdiff
2024-01-23
Ben Soares
JAL-4290 Fix image comparison between gui and headless...
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commitdiff
2023-12-19
Ben Soares
JAL-4290 Fixed one test
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commitdiff
2023-12-06
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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commitdiff
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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commitdiff
2023-11-01
James Procter
Merge branch 'develop' into patch/JAL-4281_idwidthandan...
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commitdiff
2023-10-01
James Procter
JAL-244 ensure background is completely filled with...
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commitdiff
2023-10-01
James Procter
JAL-244 export image with full width IDs regardless...
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commitdiff
2023-10-01
James Procter
JAL-244 JAL-4091 allow calculation of label id width...
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commitdiff
2023-10-01
James Procter
JAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate...
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commitdiff
2023-09-29
James Procter
JAL-244 JAL-4090 use current IdWidth when exporting...
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commitdiff
2023-09-13
Ben Soares
JAL-4274 Use Cache BITMAP_* if no other image restricti...
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commitdiff
2023-09-08
James Procter
JAL-4281 reinstate access to legacy id width calculatio...
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commitdiff
2023-09-07
James Procter
JAL-4273 release notes for visible adjuster marks,...
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commitdiff
2023-09-06
James Procter
JAL-4258 remove unnecessary ‘this’
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commitdiff
2023-08-23
Ben Soares
JAL-4250 Simplification of polygons and adjustments...
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commitdiff
2023-08-18
Ben Soares
Merge branch 'feature/JAL-244_Automatically_adjust_left...
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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commitdiff
2023-08-09
Ben Soares
JAL-244 Fix window size narrow adjustment not becoming...
feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels
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commitdiff
2023-08-08
Ben Soares
JAL-244 Fix mismatched vertical positioning of sequence...
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commitdiff
2023-08-04
Ben Soares
JAL-244 Adjust wrapped alignment widths to always maint...
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commitdiff
2023-08-01
Ben Soares
JAL-244 More control of automatic idWidth adjustments...
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commitdiff
2023-07-27
Ben Soares
JAL-244 Allow adjusting Id column width in wrap mode...
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commitdiff
2023-07-21
Ben Soares
JAL-244 Fixed idWidth labels in headless mode for non...
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commitdiff
2023-07-20
Ben Soares
JAL-244 More accurate width calculation, allow increase...
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commitdiff
2023-07-19
Ben Soares
JAL-244 Changes to Annotation labels width now adjusts...
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commitdiff
2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
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commitdiff
2023-05-22
Ben Soares
JAL-629 --structureimage with formatting args.
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
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commitdiff
2023-05-11
Ben Soares
JAL-629 Fix --tempfac. Hide non-working --notempfac...
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commitdiff
2023-05-02
Ben Soares
JAL-629 Add --renderer arg/subval for vector output...
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commitdiff
2023-02-23
James Procter
JAL-4133 update validChar width when font is changed...
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commitdiff
2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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commitdiff
2022-02-07
Jim Procter
Merge branch 'feature/JAL-1713_overviewInProject' into...
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commitdiff
2021-12-02
Jim Procter
JAL-3904 simple method to make an alignPanel the curren...
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commitdiff
2020-12-17
gmungoc
JAL-1713 close and replace auto-opened Overview with...
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commitdiff
2020-12-12
gmungoc
JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2020-03-09
gmungoc
JAL-3412 update layout whenever desired id width changes
testbuild/JAL-3412_getIdWidth_test
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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commitdiff
2019-08-19
gmungoc
JAL-3412 calculateIdWidth - more consistency, constants...
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commitdiff
2019-07-29
gmungoc
JAL-3386 correct wrapped width calculation for headless...
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commitdiff
2019-07-29
gmungoc
JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
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commitdiff
2019-07-29
gmungoc
JAL-3377 Javadoc added for getWrappedHeight()
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commitdiff
2019-07-29
gmungoc
JAL-3377 include seq-annotation spacing in getWrappedHe...
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commitdiff
2019-04-18
hansonr
// BH 2018.04.18 comment: addNotify() is not appropriat...
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commitdiff
2019-04-18
hansonr
removes unnecessary clearFastPaint
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commitdiff
2019-04-18
hansonr
hack for fastpaint Java bug upshifting one line after...
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commitdiff
2019-04-18
hansonr
adds an explicit clearing of the SeqCanvas fastPaint...
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commitdiff
2019-04-01
gmungoc
JAL-2934 scroll more for faster mousewheel / trackpad...
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
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commitdiff
2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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commitdiff
2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
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commitdiff
2019-01-18
hansonr
canvas line/font/pixel fixes; menu accelerators;
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commitdiff
2019-01-15
hansonr
removal of AlignmentFrame lines
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commitdiff
2018-12-10
hansonr
Faster JTable processing; fixes Annotation painting...
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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commitdiff
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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commitdiff
2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
bug/JAL-3099alignmentVisibleWidth
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
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commitdiff
2018-08-30
gmungoc
Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...
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commitdiff
2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
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commitdiff
2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
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commitdiff
2018-08-28
gmungoc
JAL-247 draw/print sequence ids now uses common code...
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commitdiff
2018-08-27
gmungoc
JAL-247 comment to clarify wrapped print algorithm
bug/JAL-247pngShowHiddenSeqMarks
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commitdiff
2018-08-24
gmungoc
JAL-247 print/export wrapped uses common code to draw...
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commitdiff
2018-08-24
gmungoc
JAL-247 draw/print sequence ids now uses common code...
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commitdiff
2018-07-23
gmungoc
JAL-3048 all image export (alignment, tree, PCA, Jmol...
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commitdiff
2018-07-20
gmungoc
JAL-3048 JalviewJS compliant use of LineartOptions...
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commitdiff
2018-07-19
gmungoc
JAL-3048 inlined 1-line methods, small refactor of...
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commitdiff
2018-07-09
gmungoc
JAL-1858 separate method highlightSearchResults with...
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
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commitdiff
2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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commitdiff
2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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commitdiff
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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commitdiff
2018-02-22
Jim Procter
Merge branch 'bug/JAL-2666' into releases/Release_2_10_...
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commitdiff
2018-02-08
gmungoc
JAL-2666 basic initial fix for split screen scroll bug
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commitdiff
2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
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commitdiff
2017-11-06
kiramt
JAL-2778 replace setScrollValues call in AlignmentPanel...
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commitdiff
2017-11-03
kiramt
JAL-2778 Changed local repaint to alignment repaint...
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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commitdiff
2017-10-25
Jim Procter
Merge branch 'bug/JAL-2727closeAllFreeMemory' into...
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commitdiff
2017-10-24
Jim Procter
Merge branch 'features/JAL-2608closeOverview' into...
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2609attemptedmerge' into develop
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commitdiff
2017-10-23
Jim Procter
JAL-2609 remove unused AlignPanel.fastPaint flag and...
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2739' into develop
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commitdiff
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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commitdiff
2017-09-22
kiramt
JAL-2739 Fix ported to 2.10.3
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commitdiff
2017-09-15
gmungoc
JAL-2728 limit divider to ensure seqs visible (wip!)
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commitdiff
2017-09-13
gmungoc
JAL-2727 null additional references on close
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commitdiff
2017-09-12
gmungoc
JAL-2727 ensure ViewportRanges (and gapcounts) are...
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