Merge branch 'patch/JAL-4345_pae_epas1_doubleclick' into develop
[jalview.git] / src / jalview / gui / AlignmentPanel.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply
2023-11-01 James ProcterMerge branch 'develop' into patch/JAL-4281_idwidthandan...
2023-10-01 James ProcterJAL-244 ensure background is completely filled with...
2023-10-01 James ProcterJAL-244 export image with full width IDs regardless...
2023-10-01 James ProcterJAL-244 JAL-4091 allow calculation of label id width...
2023-10-01 James ProcterJAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate...
2023-09-29 James ProcterJAL-244 JAL-4090 use current IdWidth when exporting...
2023-09-13 Ben SoaresJAL-4274 Use Cache BITMAP_* if no other image restricti...
2023-09-08 James ProcterJAL-4281 reinstate access to legacy id width calculatio...
2023-09-07 James ProcterJAL-4273 release notes for visible adjuster marks,...
2023-09-06 James ProcterJAL-4258 remove unnecessary ‘this’
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments...
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left...
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-08-09 Ben SoaresJAL-244 Fix window size narrow adjustment not becoming... feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels
2023-08-08 Ben SoaresJAL-244 Fix mismatched vertical positioning of sequence...
2023-08-04 Ben SoaresJAL-244 Adjust wrapped alignment widths to always maint...
2023-08-01 Ben SoaresJAL-244 More control of automatic idWidth adjustments...
2023-07-27 Ben SoaresJAL-244 Allow adjusting Id column width in wrap mode...
2023-07-21 Ben SoaresJAL-244 Fixed idWidth labels in headless mode for non...
2023-07-20 Ben SoaresJAL-244 More accurate width calculation, allow increase...
2023-07-19 Ben SoaresJAL-244 Changes to Annotation labels width now adjusts...
2023-06-07 James ProcterJAL-4195 add exception handling for all image output...
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args.
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac...
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output...
2023-02-23 James ProcterJAL-4133 update validChar width when font is changed...
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-07 Jim ProcterMerge branch 'feature/JAL-1713_overviewInProject' into...
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren...
2020-12-17 gmungocJAL-1713 close and replace auto-opened Overview with...
2020-12-12 gmungocJAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-09 gmungocJAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants...
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless...
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight()
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe...
2019-04-18 hansonr// BH 2018.04.18 comment: addNotify() is not appropriat...
2019-04-18 hansonrremoves unnecessary clearFastPaint
2019-04-18 hansonrhack for fastpaint Java bug upshifting one line after...
2019-04-18 hansonradds an explicit clearing of the SeqCanvas fastPaint...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into...
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi...
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators;
2019-01-15 hansonrremoval of AlignmentFrame lines
2018-12-10 hansonrFaster JTable processing; fixes Annotation painting...
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-10-16 Jim Procterviewport flag to indicate when structure view needs...
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and...
2018-08-30 gmungocMerge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw...
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code...
2018-08-27 gmungocJAL-247 comment to clarify wrapped print algorithm bug/JAL-247pngShowHiddenSeqMarks
2018-08-24 gmungocJAL-247 print/export wrapped uses common code to draw...
2018-08-24 gmungocJAL-247 draw/print sequence ids now uses common code...
2018-07-23 gmungocJAL-3048 all image export (alignment, tree, PCA, Jmol...
2018-07-20 gmungocJAL-3048 JalviewJS compliant use of LineartOptions...
2018-07-19 gmungocJAL-3048 inlined 1-line methods, small refactor of...
2018-07-09 gmungocJAL-1858 separate method highlightSearchResults with...
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight
2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
2018-02-27 Jim ProcterMerge branch 'feature/JAL-2759' into merge/JAL-2759_2104
2018-02-22 Jim ProcterMerge branch 'bug/JAL-2666' into releases/Release_2_10_...
2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2017-11-06 kiramtJAL-2778 replace setScrollValues call in AlignmentPanel...
2017-11-03 kiramtJAL-2778 Changed local repaint to alignment repaint...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-22 kiramtJAL-2739 Fix ported to 2.10.3
2017-09-15 gmungocJAL-2728 limit divider to ensure seqs visible (wip!)
2017-09-13 gmungocJAL-2727 null additional references on close
2017-09-12 gmungocJAL-2727 ensure ViewportRanges (and gapcounts) are...
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change...
2017-09-07 gmungocJAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment
2017-09-06 Jim ProcterJAL-2587 makes sure idWidthAdjuster is resized when...
2017-09-06 Jim ProcterJAL-2587 makes sure idWidthAdjuster is resized when...
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
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