source.jalview.org Git - jalview.git/history - src/jalview/gui/AlignmentPanel.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / gui / AlignmentPanel.java

2023-11-03	James Procter	JAL-4090 JAL-1551 spotlessApply	blob \| commitdiff
2023-11-01	James Procter	Merge branch 'develop' into patch/JAL-4281_idwidthandan...	blob \| commitdiff \| diff to current
2023-10-01	James Procter	JAL-244 ensure background is completely filled with...	blob \| commitdiff \| diff to current
2023-10-01	James Procter	JAL-244 export image with full width IDs regardless...	blob \| commitdiff \| diff to current
2023-10-01	James Procter	JAL-244 JAL-4091 allow calculation of label id width...	blob \| commitdiff \| diff to current
2023-10-01	James Procter	JAL-244 JAL-4091 FIXME for JAL-3362 patch testCalculate...	blob \| commitdiff \| diff to current
2023-09-29	James Procter	JAL-244 JAL-4090 use current IdWidth when exporting...	blob \| commitdiff \| diff to current
2023-09-13	Ben Soares	JAL-4274 Use Cache BITMAP_* if no other image restricti...	blob \| commitdiff \| diff to current
2023-09-08	James Procter	JAL-4281 reinstate access to legacy id width calculatio...	blob \| commitdiff \| diff to current
2023-09-07	James Procter	JAL-4273 release notes for visible adjuster marks,...	blob \| commitdiff \| diff to current
2023-09-06	James Procter	JAL-4258 remove unnecessary ‘this’	blob \| commitdiff \| diff to current
2023-08-23	Ben Soares	JAL-4250 Simplification of polygons and adjustments...	blob \| commitdiff \| diff to current
2023-08-18	Ben Soares	Merge branch 'feature/JAL-244_Automatically_adjust_left...	blob \| commitdiff \| diff to current
2023-08-10	Ben Soares	JAL-629 Change all stdout and stderr output to use...	blob \| commitdiff \| diff to current
2023-08-09	Ben Soares	JAL-244 Fix window size narrow adjustment not becoming... feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels	blob \| commitdiff \| diff to current
2023-08-08	Ben Soares	JAL-244 Fix mismatched vertical positioning of sequence...	blob \| commitdiff \| diff to current
2023-08-04	Ben Soares	JAL-244 Adjust wrapped alignment widths to always maint...	blob \| commitdiff \| diff to current
2023-08-01	Ben Soares	JAL-244 More control of automatic idWidth adjustments...	blob \| commitdiff \| diff to current
2023-07-27	Ben Soares	JAL-244 Allow adjusting Id column width in wrap mode...	blob \| commitdiff \| diff to current
2023-07-21	Ben Soares	JAL-244 Fixed idWidth labels in headless mode for non...	blob \| commitdiff \| diff to current
2023-07-20	Ben Soares	JAL-244 More accurate width calculation, allow increase...	blob \| commitdiff \| diff to current
2023-07-19	Ben Soares	JAL-244 Changes to Annotation labels width now adjusts...	blob \| commitdiff \| diff to current
2023-06-07	James Procter	JAL-4195 add exception handling for all image output...	blob \| commitdiff \| diff to current
2023-05-22	Ben Soares	JAL-629 --structureimage with formatting args.	blob \| commitdiff \| diff to current
2023-05-19	James Procter	JAL-1551 spotlessApply	blob \| commitdiff \| diff to current
2023-05-11	Ben Soares	JAL-629 Fix --tempfac. Hide non-working --notempfac...	blob \| commitdiff \| diff to current
2023-05-02	Ben Soares	JAL-629 Add --renderer arg/subval for vector output...	blob \| commitdiff \| diff to current
2023-02-23	James Procter	JAL-4133 update validChar width when font is changed...	blob \| commitdiff \| diff to current
2023-01-31	James Procter	JAL-1713 update from Jalview 2.11.3 develop	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-02-07	Jim Procter	Merge branch 'feature/JAL-1713_overviewInProject' into...	blob \| commitdiff \| diff to current
2021-12-02	Jim Procter	JAL-3904 simple method to make an alignPanel the curren...	blob \| commitdiff \| diff to current
2020-12-17	gmungoc	JAL-1713 close and replace auto-opened Overview with...	blob \| commitdiff \| diff to current
2020-12-12	gmungoc	JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-03-09	gmungoc	JAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test	blob \| commitdiff \| diff to current
2019-10-08	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2019-08-19	gmungoc	JAL-3412 calculateIdWidth - more consistency, constants...	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3386 correct wrapped width calculation for headless...	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3377 more reused of SeqCanvas.computeWrappedGeometry	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3377 Javadoc added for getWrappedHeight()	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3377 include seq-annotation spacing in getWrappedHe...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	// BH 2018.04.18 comment: addNotify() is not appropriat...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	removes unnecessary clearFastPaint	blob \| commitdiff \| diff to current
2019-04-18	hansonr	hack for fastpaint Java bug upshifting one line after...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	adds an explicit clearing of the SeqCanvas fastPaint...	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-04	gmungoc	Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...	blob \| commitdiff \| diff to current
2019-02-22	gmungoc	JAL-2915 don't recalculate Overview on scroll to positi...	blob \| commitdiff \| diff to current
2019-01-18	hansonr	canvas line/font/pixel fixes; menu accelerators;	blob \| commitdiff \| diff to current
2019-01-15	hansonr	removal of AlignmentFrame lines	blob \| commitdiff \| diff to current
2018-12-10	hansonr	Faster JTable processing; fixes Annotation painting...	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	viewport flag to indicate when structure view needs...	blob \| commitdiff \| diff to current
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff \| diff to current
2018-09-10	gmungoc	JAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth	blob \| commitdiff \| diff to current
2018-09-06	Jim Procter	JAL-2854 compute visible annotation panel height and...	blob \| commitdiff \| diff to current
2018-08-30	gmungoc	Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	blob \| commitdiff \| diff to current
2018-08-27	gmungoc	JAL-247 comment to clarify wrapped print algorithm bug/JAL-247pngShowHiddenSeqMarks	blob \| commitdiff \| diff to current
2018-08-24	gmungoc	JAL-247 print/export wrapped uses common code to draw...	blob \| commitdiff \| diff to current
2018-08-24	gmungoc	JAL-247 draw/print sequence ids now uses common code...	blob \| commitdiff \| diff to current
2018-07-23	gmungoc	JAL-3048 all image export (alignment, tree, PCA, Jmol...	blob \| commitdiff \| diff to current
2018-07-20	gmungoc	JAL-3048 JalviewJS compliant use of LineartOptions...	blob \| commitdiff \| diff to current
2018-07-19	gmungoc	JAL-3048 inlined 1-line methods, small refactor of...	blob \| commitdiff \| diff to current
2018-07-09	gmungoc	JAL-1858 separate method highlightSearchResults with...	blob \| commitdiff \| diff to current
2018-05-25	gmungoc	JAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight	blob \| commitdiff \| diff to current
2018-03-13	gmungoc	JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)	blob \| commitdiff \| diff to current
2018-03-07	gmungoc	JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...	blob \| commitdiff \| diff to current
2018-02-27	Jim Procter	Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104	blob \| commitdiff \| diff to current
2018-02-22	Jim Procter	Merge branch 'bug/JAL-2666' into releases/Release_2_10_...	blob \| commitdiff \| diff to current
2018-02-08	gmungoc	JAL-2666 basic initial fix for split screen scroll bug	blob \| commitdiff \| diff to current
2018-01-25	kiramt	JAL-2778 Reinstate id width adjuster	blob \| commitdiff \| diff to current
2018-01-15	kiramt	JAL-2759 Rename findColumnPosition and adjustForHiddenC...	blob \| commitdiff \| diff to current
2017-11-06	kiramt	JAL-2778 replace setScrollValues call in AlignmentPanel...	blob \| commitdiff \| diff to current
2017-11-03	kiramt	JAL-2778 Changed local repaint to alignment repaint...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	blob \| commitdiff \| diff to current
2017-10-24	Jim Procter	Merge branch 'features/JAL-2608closeOverview' into...	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	JAL-2609 remove unused AlignPanel.fastPaint flag and...	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2739' into develop	blob \| commitdiff \| diff to current
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-22	kiramt	JAL-2739 Fix ported to 2.10.3	blob \| commitdiff \| diff to current
2017-09-15	gmungoc	JAL-2728 limit divider to ensure seqs visible (wip!)	blob \| commitdiff \| diff to current
2017-09-13	gmungoc	JAL-2727 null additional references on close	blob \| commitdiff \| diff to current
2017-09-12	gmungoc	JAL-2727 ensure ViewportRanges (and gapcounts) are...	blob \| commitdiff \| diff to current
2017-09-07	gmungoc	JAL-2511 invalidate scale panel holder on font change...	blob \| commitdiff \| diff to current
2017-09-07	gmungoc	JAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment	blob \| commitdiff \| diff to current
2017-09-06	Jim Procter	JAL-2587 makes sure idWidthAdjuster is resized when...	blob \| commitdiff \| diff to current
2017-09-06	Jim Procter	JAL-2587 makes sure idWidthAdjuster is resized when...	blob \| commitdiff \| diff to current
2017-09-05	Jim Procter	Merge branch 'master' into portforward/JAL-2675_2102b1t...	blob \| commitdiff \| diff to current
next

RSS Atom